Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYNJ2-IT1 (SYNJ2 intronic transcript 1)

Identity

Alias_namesSYNJ2 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) SYNJ2-IT1
LocusID (NCBI) 100874300
Atlas_Id 74420
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 158001107 and ends at 158002383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNJ2-IT1   41387
Cards
Entrez_Gene (NCBI)SYNJ2-IT1  100874300  SYNJ2 intronic transcript 1
Aliases
GeneCards (Weizmann)SYNJ2-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:158001107-158002383 [Contig_View]  SYNJ2-IT1 [Vega]
TCGA cBioPortalSYNJ2-IT1
AceView (NCBI)SYNJ2-IT1
Genatlas (Paris)SYNJ2-IT1
WikiGenes100874300
SOURCE (Princeton)SYNJ2-IT1
Genetics Home Reference (NIH)SYNJ2-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)SYNJ2-IT1  -     chr6:158001107-158002383 +  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNJ2-IT1  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblSYNJ2-IT1 - 6q25.3 [CytoView hg19]  SYNJ2-IT1 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBISYNJ2-IT1 [Mapview hg19]  SYNJ2-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI831676
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNJ2-IT1
Cluster EST : UnigeneHs.742238 [ NCBI ]
CGAP (NCI)Hs.742238
Gene ExpressionSYNJ2-IT1 [ NCBI-GEO ]   SYNJ2-IT1 [ EBI - ARRAY_EXPRESS ]   SYNJ2-IT1 [ SEEK ]   SYNJ2-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNJ2-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874300
GTEX Portal (Tissue expression)SYNJ2-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SYNJ2-IT1
DMDM Disease mutations100874300
Blocks (Seattle)SYNJ2-IT1
Protein Interaction databases
BioGRIDSYNJ2-IT1
STRING (EMBL)SYNJ2-IT1
ZODIACSYNJ2-IT1
Ontologies - Pathways
Huge Navigator SYNJ2-IT1 [HugePedia]
snp3D : Map Gene to Disease100874300
BioCentury BCIQSYNJ2-IT1
ClinGenSYNJ2-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874300
Clinical trialSYNJ2-IT1
Miscellaneous
canSAR (ICR)SYNJ2-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNJ2-IT1
EVEXSYNJ2-IT1
GoPubMedSYNJ2-IT1
iHOPSYNJ2-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:51 CEST 2018

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