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SYNJ2BP-COX16 (SYNJ2BP-COX16 readthrough)

Identity

Other alias-
HGNC (Hugo) SYNJ2BP-COX16
LocusID (NCBI) 100529257
Atlas_Id 74419
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 70325081 and ends at 70417090 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD82 (11p11.2) / SYNJ2BP-COX16 (14q24.2)PFDN6 (6p21.32) / SYNJ2BP-COX16 (14q24.2)SYNJ2BP-COX16 (14q24.2) / SYNJ2BP-COX16 (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNJ2BP-COX16   48350
Cards
Entrez_Gene (NCBI)SYNJ2BP-COX16  100529257  SYNJ2BP-COX16 readthrough
Aliases
GeneCards (Weizmann)SYNJ2BP-COX16
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:70325081-70417090 [Contig_View]  SYNJ2BP-COX16 [Vega]
TCGA cBioPortalSYNJ2BP-COX16
AceView (NCBI)SYNJ2BP-COX16
Genatlas (Paris)SYNJ2BP-COX16
WikiGenes100529257
SOURCE (Princeton)SYNJ2BP-COX16
Genetics Home Reference (NIH)SYNJ2BP-COX16
Genomic and cartography
GoldenPath hg38 (UCSC)SYNJ2BP-COX16  -     chr14:70325081-70417090 -  14q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNJ2BP-COX16  -     14q24.2   [Description]    (hg19-Feb_2009)
EnsemblSYNJ2BP-COX16 - 14q24.2 [CytoView hg19]  SYNJ2BP-COX16 - 14q24.2 [CytoView hg38]
Mapping of homologs : NCBISYNJ2BP-COX16 [Mapview hg19]  SYNJ2BP-COX16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)FY210787 FY211163 FY213292 FY213836
RefSeq transcript (Entrez)NM_001202547 NM_001202548 NM_001202549
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNJ2BP-COX16
Cluster EST : UnigeneHs.709581 [ NCBI ]
CGAP (NCI)Hs.709581
Gene ExpressionSYNJ2BP-COX16 [ NCBI-GEO ]   SYNJ2BP-COX16 [ EBI - ARRAY_EXPRESS ]   SYNJ2BP-COX16 [ SEEK ]   SYNJ2BP-COX16 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNJ2BP-COX16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100529257
GTEX Portal (Tissue expression)SYNJ2BP-COX16
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SYNJ2BP-COX16
DMDM Disease mutations100529257
Blocks (Seattle)SYNJ2BP-COX16
IPIIPI00981628   IPI00978781   IPI00980349   
Protein Interaction databases
BioGRIDSYNJ2BP-COX16
STRING (EMBL)SYNJ2BP-COX16
ZODIACSYNJ2BP-COX16
Ontologies - Pathways
Huge Navigator SYNJ2BP-COX16 [HugePedia]
snp3D : Map Gene to Disease100529257
BioCentury BCIQSYNJ2BP-COX16
ClinGenSYNJ2BP-COX16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100529257
Clinical trialSYNJ2BP-COX16
Miscellaneous
canSAR (ICR)SYNJ2BP-COX16 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNJ2BP-COX16
EVEXSYNJ2BP-COX16
GoPubMedSYNJ2BP-COX16
iHOPSYNJ2BP-COX16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:51 CEST 2017

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