Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SYNPO2L (synaptopodin 2 like)

Identity

Alias (NCBI)-
HGNC (Hugo) SYNPO2L
HGNC Alias symbFLJ12921
HGNC Previous namesynaptopodin 2-like
LocusID (NCBI) 79933
Atlas_Id 74422
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73644886 and ends at 73651040 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ERBIN (5q12.3) / SYNPO2L (10q22.2)SYNPO2L (10q22.2) / MYOZ1 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)SYNPO2L   23532
Cards
Entrez_Gene (NCBI)SYNPO2L    synaptopodin 2 like
Aliases
GeneCards (Weizmann)SYNPO2L
Ensembl hg19 (Hinxton)ENSG00000166317 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166317 [Gene_View]  ENSG00000166317 [Sequence]  chr10:73644886-73651040 [Contig_View]  SYNPO2L [Vega]
ICGC DataPortalENSG00000166317
TCGA cBioPortalSYNPO2L
AceView (NCBI)SYNPO2L
Genatlas (Paris)SYNPO2L
SOURCE (Princeton)SYNPO2L
Genetics Home Reference (NIH)SYNPO2L
Genomic and cartography
GoldenPath hg38 (UCSC)SYNPO2L  -     chr10:73644886-73651040 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNPO2L  -     10q22.2   [Description]    (hg19-Feb_2009)
GoldenPathSYNPO2L - 10q22.2 [CytoView hg19]  SYNPO2L - 10q22.2 [CytoView hg38]
ImmunoBaseENSG00000166317
Genome Data Viewer NCBISYNPO2L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA176924 AB188489 AK022983 AK095931 AK295873
RefSeq transcript (Entrez)NM_001114133 NM_024875
Consensus coding sequences : CCDS (NCBI)SYNPO2L
Gene ExpressionSYNPO2L [ NCBI-GEO ]   SYNPO2L [ EBI - ARRAY_EXPRESS ]   SYNPO2L [ SEEK ]   SYNPO2L [ MEM ]
Gene Expression Viewer (FireBrowse)SYNPO2L [ Firebrowse - Broad ]
GenevisibleExpression of SYNPO2L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79933
GTEX Portal (Tissue expression)SYNPO2L
Human Protein AtlasENSG00000166317-SYNPO2L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H987   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H987  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H987
PhosPhoSitePlusQ9H987
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ    PDZ_sf   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)SYNPO2L
SuperfamilyQ9H987
AlphaFold pdb e-kbQ9H987   
Human Protein Atlas [tissue]ENSG00000166317-SYNPO2L [tissue]
HPRD15457
Protein Interaction databases
DIP (DOE-UCLA)Q9H987
IntAct (EBI)Q9H987
BioGRIDSYNPO2L
STRING (EMBL)SYNPO2L
ZODIACSYNPO2L
Ontologies - Pathways
QuickGOQ9H987
Ontology : AmiGOheart morphogenesis  actin binding  nucleus  nucleoplasm  cytosol  actin cytoskeleton  nuclear speck  Z disc  Z disc  cell junction  positive regulation of actin filament bundle assembly  positive regulation of Rho protein signal transduction  sarcomere organization  positive regulation of stress fiber assembly  
Ontology : EGO-EBIheart morphogenesis  actin binding  nucleus  nucleoplasm  cytosol  actin cytoskeleton  nuclear speck  Z disc  Z disc  cell junction  positive regulation of actin filament bundle assembly  positive regulation of Rho protein signal transduction  sarcomere organization  positive regulation of stress fiber assembly  
NDEx NetworkSYNPO2L
Atlas of Cancer Signalling NetworkSYNPO2L
Wikipedia pathwaysSYNPO2L
Orthology - Evolution
OrthoDB79933
GeneTree (enSembl)ENSG00000166317
Phylogenetic Trees/Animal Genes : TreeFamSYNPO2L
Homologs : HomoloGeneSYNPO2L
Homology/Alignments : Family Browser (UCSC)SYNPO2L
Gene fusions - Rearrangements
Fusion : QuiverSYNPO2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNPO2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNPO2L
dbVarSYNPO2L
ClinVarSYNPO2L
MonarchSYNPO2L
1000_GenomesSYNPO2L 
Exome Variant ServerSYNPO2L
GNOMAD BrowserENSG00000166317
Varsome BrowserSYNPO2L
ACMGSYNPO2L variants
VarityQ9H987
Genomic Variants (DGV)SYNPO2L [DGVbeta]
DECIPHERSYNPO2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNPO2L 
Mutations
ICGC Data PortalSYNPO2L 
TCGA Data PortalSYNPO2L 
Broad Tumor PortalSYNPO2L
OASIS PortalSYNPO2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNPO2L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSYNPO2L
Mutations and Diseases : HGMDSYNPO2L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSYNPO2L
DgiDB (Drug Gene Interaction Database)SYNPO2L
DoCM (Curated mutations)SYNPO2L
CIViC (Clinical Interpretations of Variants in Cancer)SYNPO2L
Cancer3DSYNPO2L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSYNPO2L
MedgenSYNPO2L
Genetic Testing Registry SYNPO2L
NextProtQ9H987 [Medical]
GENETestsSYNPO2L
Target ValidationSYNPO2L
Huge Navigator SYNPO2L [HugePedia]
ClinGenSYNPO2L
Clinical trials, drugs, therapy
MyCancerGenomeSYNPO2L
Protein Interactions : CTDSYNPO2L
Pharm GKB GenePA134889033
PharosQ9H987
Clinical trialSYNPO2L
Miscellaneous
canSAR (ICR)SYNPO2L
HarmonizomeSYNPO2L
DataMed IndexSYNPO2L
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSYNPO2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:41 CEST 2021
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