Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SYNPR (synaptoporin)

Identity

Alias_symbol (synonym)MGC26651
SPO
Other alias
HGNC (Hugo) SYNPR
LocusID (NCBI) 132204
Atlas_Id 74423
Location 3p14.2  [Link to chromosome band 3p14]
Location_base_pair Starts at 63263914 and ends at 63602597 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADAMTS9 (3p14.1) / SYNPR (3p14.2)FHIT (3p14.2) / SYNPR (3p14.2)PTPRG (3p14.2) / SYNPR (3p14.2)
SPARCL1 (4q22.1) / SYNPR (3p14.2)VGLL4 (3p25.3) / SYNPR (3p14.2)VGLL4 SYNPR
FHIT SYNPRADAMTS9 SYNPRPTPRG SYNPR

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNPR   16507
Cards
Entrez_Gene (NCBI)SYNPR  132204  synaptoporin
AliasesSPO
GeneCards (Weizmann)SYNPR
Ensembl hg19 (Hinxton)ENSG00000163630 [Gene_View]  chr3:63263914-63602597 [Contig_View]  SYNPR [Vega]
Ensembl hg38 (Hinxton)ENSG00000163630 [Gene_View]  chr3:63263914-63602597 [Contig_View]  SYNPR [Vega]
ICGC DataPortalENSG00000163630
TCGA cBioPortalSYNPR
AceView (NCBI)SYNPR
Genatlas (Paris)SYNPR
WikiGenes132204
SOURCE (Princeton)SYNPR
Genetics Home Reference (NIH)SYNPR
Genomic and cartography
GoldenPath hg19 (UCSC)SYNPR  -     chr3:63263914-63602597 +  3p14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SYNPR  -     3p14.2   [Description]    (hg38-Dec_2013)
EnsemblSYNPR - 3p14.2 [CytoView hg19]  SYNPR - 3p14.2 [CytoView hg38]
Mapping of homologs : NCBISYNPR [Mapview hg19]  SYNPR [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF411860 AK122831 AK293628 AK309017 AK312465
RefSeq transcript (Entrez)NM_001130003 NM_144642
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)SYNPR
Cluster EST : UnigeneHs.648668 [ NCBI ]
CGAP (NCI)Hs.648668
Alternative Splicing GalleryENSG00000163630
Gene ExpressionSYNPR [ NCBI-GEO ]   SYNPR [ EBI - ARRAY_EXPRESS ]   SYNPR [ SEEK ]   SYNPR [ MEM ]
Gene Expression Viewer (FireBrowse)SYNPR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132204
GTEX Portal (Tissue expression)SYNPR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBG9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBG9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBG9
Splice isoforms : SwissVarQ8TBG9
PhosPhoSitePlusQ8TBG9
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)    SYNAPTOP (PS00604)   
Domains : Interpro (EBI)Marvel    Synaptophysin/porin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYNPR
DMDM Disease mutations132204
Blocks (Seattle)SYNPR
SuperfamilyQ8TBG9
Human Protein AtlasENSG00000163630
Peptide AtlasQ8TBG9
HPRD15458
IPIIPI00047169   IPI00910168   IPI00945206   IPI00945591   IPI00946224   IPI00946629   IPI00946782   IPI00947418   IPI00944997   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBG9
IntAct (EBI)Q8TBG9
FunCoupENSG00000163630
BioGRIDSYNPR
STRING (EMBL)SYNPR
ZODIACSYNPR
Ontologies - Pathways
QuickGOQ8TBG9
Ontology : AmiGOtransporter activity  protein binding  transport  cell junction  integral component of synaptic vesicle membrane  synaptic vesicle membrane  neuron projection  
Ontology : EGO-EBItransporter activity  protein binding  transport  cell junction  integral component of synaptic vesicle membrane  synaptic vesicle membrane  neuron projection  
NDEx NetworkSYNPR
Atlas of Cancer Signalling NetworkSYNPR
Wikipedia pathwaysSYNPR
Orthology - Evolution
OrthoDB132204
GeneTree (enSembl)ENSG00000163630
Phylogenetic Trees/Animal Genes : TreeFamSYNPR
HOVERGENQ8TBG9
HOGENOMQ8TBG9
Homologs : HomoloGeneSYNPR
Homology/Alignments : Family Browser (UCSC)SYNPR
Gene fusions - Rearrangements
Fusion: TCGAVGLL4 SYNPR
Fusion: TCGAFHIT SYNPR
Fusion: TCGAADAMTS9 SYNPR
Fusion: TCGAPTPRG SYNPR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNPR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNPR
dbVarSYNPR
ClinVarSYNPR
1000_GenomesSYNPR 
Exome Variant ServerSYNPR
ExAC (Exome Aggregation Consortium)SYNPR (select the gene name)
Genetic variants : HAPMAP132204
Genomic Variants (DGV)SYNPR [DGVbeta]
DECIPHER (Syndromes)3:63263914-63602597  ENSG00000163630
CONAN: Copy Number AnalysisSYNPR 
Mutations
ICGC Data PortalSYNPR 
TCGA Data PortalSYNPR 
Broad Tumor PortalSYNPR
OASIS PortalSYNPR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNPR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNPR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNPR
DgiDB (Drug Gene Interaction Database)SYNPR
DoCM (Curated mutations)SYNPR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNPR (select a term)
intoGenSYNPR
Cancer3DSYNPR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSYNPR
Genetic Testing Registry SYNPR
NextProtQ8TBG9 [Medical]
TSGene132204
GENETestsSYNPR
Huge Navigator SYNPR [HugePedia]
snp3D : Map Gene to Disease132204
BioCentury BCIQSYNPR
ClinGenSYNPR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132204
Chemical/Pharm GKB GenePA38154
Clinical trialSYNPR
Miscellaneous
canSAR (ICR)SYNPR (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNPR
EVEXSYNPR
GoPubMedSYNPR
iHOPSYNPR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:47:15 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.