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SYP-AS1 (SYP antisense RNA 1)

Identity

Alias_namesSYP antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SYP-AS1
LocusID (NCBI) 100873921
Atlas_Id 74425
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49198839 and ends at 49202454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYP-AS1   40571
Cards
Entrez_Gene (NCBI)SYP-AS1  100873921  SYP antisense RNA 1
Aliases
GeneCards (Weizmann)SYP-AS1
Ensembl hg19 (Hinxton)ENSG00000237341 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237341 [Gene_View]  chrX:49198839-49202454 [Contig_View]  SYP-AS1 [Vega]
ICGC DataPortalENSG00000237341
TCGA cBioPortalSYP-AS1
AceView (NCBI)SYP-AS1
Genatlas (Paris)SYP-AS1
WikiGenes100873921
SOURCE (Princeton)SYP-AS1
Genetics Home Reference (NIH)SYP-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SYP-AS1  -     chrX:49198839-49202454 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYP-AS1  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblSYP-AS1 - Xp11.23 [CytoView hg19]  SYP-AS1 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISYP-AS1 [Mapview hg19]  SYP-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI018666 AI806188 BX104027
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYP-AS1
Cluster EST : UnigeneHs.666661 [ NCBI ]
CGAP (NCI)Hs.666661
Alternative Splicing GalleryENSG00000237341
Gene ExpressionSYP-AS1 [ NCBI-GEO ]   SYP-AS1 [ EBI - ARRAY_EXPRESS ]   SYP-AS1 [ SEEK ]   SYP-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYP-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100873921
GTEX Portal (Tissue expression)SYP-AS1
Human Protein AtlasENSG00000237341-SYP-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SYP-AS1
DMDM Disease mutations100873921
Blocks (Seattle)SYP-AS1
Human Protein Atlas [tissue]ENSG00000237341-SYP-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000237341
BioGRIDSYP-AS1
STRING (EMBL)SYP-AS1
ZODIACSYP-AS1
Ontologies - Pathways
Huge Navigator SYP-AS1 [HugePedia]
snp3D : Map Gene to Disease100873921
BioCentury BCIQSYP-AS1
ClinGenSYP-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873921
Clinical trialSYP-AS1
Miscellaneous
canSAR (ICR)SYP-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYP-AS1
EVEXSYP-AS1
GoPubMedSYP-AS1
iHOPSYP-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:44 CET 2017

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