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SYPL1 (synaptophysin like 1)

Identity

Alias_namesSYPL
synaptophysin-like protein
synaptophysin-like 1
Other aliasH-SP1
HGNC (Hugo) SYPL1
LocusID (NCBI) 6856
Atlas_Id 74426
Location 7q22.3  [Link to chromosome band 7q22]
Location_base_pair Starts at 106090368 and ends at 106112647 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF10 (12q24.31) / SYPL1 (7q22.3)SYPL1 (7q22.3) / AKR1D1 (7q33)SYPL1 (7q22.3) / TMEM168 (7q31.1)
SYPL1 AKR1D1SYPL1 TMEM168

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYPL1   11507
Cards
Entrez_Gene (NCBI)SYPL1  6856  synaptophysin like 1
AliasesH-SP1; SYPL
GeneCards (Weizmann)SYPL1
Ensembl hg19 (Hinxton)ENSG00000008282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000008282 [Gene_View]  chr7:106090368-106112647 [Contig_View]  SYPL1 [Vega]
ICGC DataPortalENSG00000008282
TCGA cBioPortalSYPL1
AceView (NCBI)SYPL1
Genatlas (Paris)SYPL1
WikiGenes6856
SOURCE (Princeton)SYPL1
Genetics Home Reference (NIH)SYPL1
Genomic and cartography
GoldenPath hg38 (UCSC)SYPL1  -     chr7:106090368-106112647 -  7q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYPL1  -     7q22.3   [Description]    (hg19-Feb_2009)
EnsemblSYPL1 - 7q22.3 [CytoView hg19]  SYPL1 - 7q22.3 [CytoView hg38]
Mapping of homologs : NCBISYPL1 [Mapview hg19]  SYPL1 [Mapview hg38]
OMIM616665   
Gene and transcription
Genbank (Entrez)AA969654 AK128279 AK128299 AK292230 BC016835
RefSeq transcript (Entrez)NM_006754 NM_182715
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYPL1
Cluster EST : UnigeneHs.80919 [ NCBI ]
CGAP (NCI)Hs.80919
Alternative Splicing GalleryENSG00000008282
Gene ExpressionSYPL1 [ NCBI-GEO ]   SYPL1 [ EBI - ARRAY_EXPRESS ]   SYPL1 [ SEEK ]   SYPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6856
GTEX Portal (Tissue expression)SYPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16563   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16563  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16563
Splice isoforms : SwissVarQ16563
PhosPhoSitePlusQ16563
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel    Synaptophysin/porin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYPL1
DMDM Disease mutations6856
Blocks (Seattle)SYPL1
SuperfamilyQ16563
Human Protein AtlasENSG00000008282
Peptide AtlasQ16563
HPRD15459
IPIIPI00009507   IPI00335277   IPI00945195   IPI00947355   
Protein Interaction databases
DIP (DOE-UCLA)Q16563
IntAct (EBI)Q16563
FunCoupENSG00000008282
BioGRIDSYPL1
STRING (EMBL)SYPL1
ZODIACSYPL1
Ontologies - Pathways
QuickGOQ16563
Ontology : AmiGOtransporter activity  integral component of plasma membrane  transport  chemical synaptic transmission  synaptic vesicle  integral component of membrane  secretory granule  integral component of synaptic vesicle membrane  melanosome  extracellular exosome  
Ontology : EGO-EBItransporter activity  integral component of plasma membrane  transport  chemical synaptic transmission  synaptic vesicle  integral component of membrane  secretory granule  integral component of synaptic vesicle membrane  melanosome  extracellular exosome  
NDEx NetworkSYPL1
Atlas of Cancer Signalling NetworkSYPL1
Wikipedia pathwaysSYPL1
Orthology - Evolution
OrthoDB6856
GeneTree (enSembl)ENSG00000008282
Phylogenetic Trees/Animal Genes : TreeFamSYPL1
HOVERGENQ16563
HOGENOMQ16563
Homologs : HomoloGeneSYPL1
Homology/Alignments : Family Browser (UCSC)SYPL1
Gene fusions - Rearrangements
Fusion: TCGASYPL1 AKR1D1
Fusion: TCGASYPL1 TMEM168
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYPL1
dbVarSYPL1
ClinVarSYPL1
1000_GenomesSYPL1 
Exome Variant ServerSYPL1
ExAC (Exome Aggregation Consortium)SYPL1 (select the gene name)
Genetic variants : HAPMAP6856
Genomic Variants (DGV)SYPL1 [DGVbeta]
DECIPHERSYPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYPL1 
Mutations
ICGC Data PortalSYPL1 
TCGA Data PortalSYPL1 
Broad Tumor PortalSYPL1
OASIS PortalSYPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYPL1
DgiDB (Drug Gene Interaction Database)SYPL1
DoCM (Curated mutations)SYPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYPL1 (select a term)
intoGenSYPL1
Cancer3DSYPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616665   
Orphanet
MedgenSYPL1
Genetic Testing Registry SYPL1
NextProtQ16563 [Medical]
TSGene6856
GENETestsSYPL1
Target ValidationSYPL1
Huge Navigator SYPL1 [HugePedia]
snp3D : Map Gene to Disease6856
BioCentury BCIQSYPL1
ClinGenSYPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6856
Chemical/Pharm GKB GenePA36289
Clinical trialSYPL1
Miscellaneous
canSAR (ICR)SYPL1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYPL1
EVEXSYPL1
GoPubMedSYPL1
iHOPSYPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:52 CEST 2017

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