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SYPL2 (synaptophysin like 2)

Identity

Alias (NCBI)MG29
HGNC (Hugo) SYPL2
HGNC Alias symbMg29
HGNC Alias namemitsugumin-29
HGNC Previous namesynaptophysin-like 2
LocusID (NCBI) 284612
Atlas_Id 74427
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109466478 and ends at 109482142 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SYPL2   27638
Cards
Entrez_Gene (NCBI)SYPL2    synaptophysin like 2
AliasesMG29
GeneCards (Weizmann)SYPL2
Ensembl hg19 (Hinxton)ENSG00000143028 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143028 [Gene_View]  ENSG00000143028 [Sequence]  chr1:109466478-109482142 [Contig_View]  SYPL2 [Vega]
ICGC DataPortalENSG00000143028
TCGA cBioPortalSYPL2
AceView (NCBI)SYPL2
Genatlas (Paris)SYPL2
SOURCE (Princeton)SYPL2
Genetics Home Reference (NIH)SYPL2
Genomic and cartography
GoldenPath hg38 (UCSC)SYPL2  -     chr1:109466478-109482142 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYPL2  -     1p13.3   [Description]    (hg19-Feb_2009)
GoldenPathSYPL2 - 1p13.3 [CytoView hg19]  SYPL2 - 1p13.3 [CytoView hg38]
ImmunoBaseENSG00000143028
genome Data Viewer NCBISYPL2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB158472 AI983207 AK095168 AK131459 AK289513
RefSeq transcript (Entrez)NM_001006603 NM_001040709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYPL2
Alternative Splicing GalleryENSG00000143028
Gene ExpressionSYPL2 [ NCBI-GEO ]   SYPL2 [ EBI - ARRAY_EXPRESS ]   SYPL2 [ SEEK ]   SYPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)SYPL2 [ Firebrowse - Broad ]
GenevisibleExpression of SYPL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284612
GTEX Portal (Tissue expression)SYPL2
Human Protein AtlasENSG00000143028-SYPL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXT5
Splice isoforms : SwissVarQ5VXT5
PhosPhoSitePlusQ5VXT5
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel    Synaptophysin/porin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYPL2
Blocks (Seattle)SYPL2
SuperfamilyQ5VXT5
Human Protein Atlas [tissue]ENSG00000143028-SYPL2 [tissue]
Peptide AtlasQ5VXT5
HPRD17478
IPIIPI00477131   IPI00418582   IPI00910352   IPI00432119   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXT5
IntAct (EBI)Q5VXT5
BioGRIDSYPL2
STRING (EMBL)SYPL2
ZODIACSYPL2
Ontologies - Pathways
QuickGOQ5VXT5
Ontology : AmiGOcell  cellular calcium ion homeostasis  heart development  integral component of membrane  syntaxin-1 binding  substantia nigra development  synaptic vesicle membrane  T-tubule organization  
Ontology : EGO-EBIcell  cellular calcium ion homeostasis  heart development  integral component of membrane  syntaxin-1 binding  substantia nigra development  synaptic vesicle membrane  T-tubule organization  
NDEx NetworkSYPL2
Atlas of Cancer Signalling NetworkSYPL2
Wikipedia pathwaysSYPL2
Orthology - Evolution
OrthoDB284612
GeneTree (enSembl)ENSG00000143028
Phylogenetic Trees/Animal Genes : TreeFamSYPL2
HOGENOMQ5VXT5
Homologs : HomoloGeneSYPL2
Homology/Alignments : Family Browser (UCSC)SYPL2
Gene fusions - Rearrangements
Fusion : QuiverSYPL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYPL2 [hg38]
dbVarSYPL2
ClinVarSYPL2
MonarchSYPL2
1000_GenomesSYPL2 
Exome Variant ServerSYPL2
GNOMAD BrowserENSG00000143028
Varsome BrowserSYPL2
Genomic Variants (DGV)SYPL2 [DGVbeta]
DECIPHERSYPL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYPL2 
Mutations
ICGC Data PortalSYPL2 
TCGA Data PortalSYPL2 
Broad Tumor PortalSYPL2
OASIS PortalSYPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSYPL2
Mutations and Diseases : HGMDSYPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYPL2
DgiDB (Drug Gene Interaction Database)SYPL2
DoCM (Curated mutations)SYPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYPL2 (select a term)
intoGenSYPL2
Cancer3DSYPL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSYPL2
MedgenSYPL2
Genetic Testing Registry SYPL2
NextProtQ5VXT5 [Medical]
GENETestsSYPL2
Target ValidationSYPL2
Huge Navigator SYPL2 [HugePedia]
ClinGenSYPL2
Clinical trials, drugs, therapy
MyCancerGenomeSYPL2
Protein Interactions : CTD
Pharm GKB GenePA142670846
Clinical trialSYPL2
Miscellaneous
canSAR (ICR)SYPL2 (select the gene name)
HarmonizomeSYPL2
DataMed IndexSYPL2
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYPL2
EVEXSYPL2
GoPubMedSYPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:30:56 CET 2020

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