Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SYPL2 (synaptophysin like 2)

Identity

Alias_namessynaptophysin-like 2
Alias_symbol (synonym)Mg29
Other aliasMG29
HGNC (Hugo) SYPL2
LocusID (NCBI) 284612
Atlas_Id 74427
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109466478 and ends at 109482142 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYPL2   27638
Cards
Entrez_Gene (NCBI)SYPL2  284612  synaptophysin like 2
AliasesMG29
GeneCards (Weizmann)SYPL2
Ensembl hg19 (Hinxton)ENSG00000143028 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143028 [Gene_View]  chr1:109466478-109482142 [Contig_View]  SYPL2 [Vega]
ICGC DataPortalENSG00000143028
TCGA cBioPortalSYPL2
AceView (NCBI)SYPL2
Genatlas (Paris)SYPL2
WikiGenes284612
SOURCE (Princeton)SYPL2
Genetics Home Reference (NIH)SYPL2
Genomic and cartography
GoldenPath hg38 (UCSC)SYPL2  -     chr1:109466478-109482142 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYPL2  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblSYPL2 - 1p13.3 [CytoView hg19]  SYPL2 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBISYPL2 [Mapview hg19]  SYPL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB158472 AI983207 AK095168 AK131459 AK289513
RefSeq transcript (Entrez)NM_001006603 NM_001040709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYPL2
Cluster EST : UnigeneHs.528366 [ NCBI ]
CGAP (NCI)Hs.528366
Alternative Splicing GalleryENSG00000143028
Gene ExpressionSYPL2 [ NCBI-GEO ]   SYPL2 [ EBI - ARRAY_EXPRESS ]   SYPL2 [ SEEK ]   SYPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)SYPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284612
GTEX Portal (Tissue expression)SYPL2
Human Protein AtlasENSG00000143028-SYPL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXT5
Splice isoforms : SwissVarQ5VXT5
PhosPhoSitePlusQ5VXT5
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel    Synaptophysin/porin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYPL2
DMDM Disease mutations284612
Blocks (Seattle)SYPL2
SuperfamilyQ5VXT5
Human Protein Atlas [tissue]ENSG00000143028-SYPL2 [tissue]
Peptide AtlasQ5VXT5
HPRD17478
IPIIPI00477131   IPI00418582   IPI00910352   IPI00432119   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXT5
IntAct (EBI)Q5VXT5
FunCoupENSG00000143028
BioGRIDSYPL2
STRING (EMBL)SYPL2
ZODIACSYPL2
Ontologies - Pathways
QuickGOQ5VXT5
Ontology : AmiGOtransporter activity  transport  cellular calcium ion homeostasis  synaptic vesicle  substantia nigra development  integral component of synaptic vesicle membrane  
Ontology : EGO-EBItransporter activity  transport  cellular calcium ion homeostasis  synaptic vesicle  substantia nigra development  integral component of synaptic vesicle membrane  
NDEx NetworkSYPL2
Atlas of Cancer Signalling NetworkSYPL2
Wikipedia pathwaysSYPL2
Orthology - Evolution
OrthoDB284612
GeneTree (enSembl)ENSG00000143028
Phylogenetic Trees/Animal Genes : TreeFamSYPL2
HOVERGENQ5VXT5
HOGENOMQ5VXT5
Homologs : HomoloGeneSYPL2
Homology/Alignments : Family Browser (UCSC)SYPL2
Gene fusions - Rearrangements
Tumor Fusion PortalSYPL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYPL2
dbVarSYPL2
ClinVarSYPL2
1000_GenomesSYPL2 
Exome Variant ServerSYPL2
ExAC (Exome Aggregation Consortium)ENSG00000143028
GNOMAD BrowserENSG00000143028
Genetic variants : HAPMAP284612
Genomic Variants (DGV)SYPL2 [DGVbeta]
DECIPHERSYPL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYPL2 
Mutations
ICGC Data PortalSYPL2 
TCGA Data PortalSYPL2 
Broad Tumor PortalSYPL2
OASIS PortalSYPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYPL2
DgiDB (Drug Gene Interaction Database)SYPL2
DoCM (Curated mutations)SYPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYPL2 (select a term)
intoGenSYPL2
Cancer3DSYPL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSYPL2
MedgenSYPL2
Genetic Testing Registry SYPL2
NextProtQ5VXT5 [Medical]
TSGene284612
GENETestsSYPL2
Target ValidationSYPL2
Huge Navigator SYPL2 [HugePedia]
snp3D : Map Gene to Disease284612
BioCentury BCIQSYPL2
ClinGenSYPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284612
Chemical/Pharm GKB GenePA142670846
Clinical trialSYPL2
Miscellaneous
canSAR (ICR)SYPL2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYPL2
EVEXSYPL2
GoPubMedSYPL2
iHOPSYPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:03:15 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.