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SYS1 (SYS1, golgi trafficking protein)

Identity

Alias_namesC20orf169
chromosome 20 open reading frame 169
SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
Sys1 golgi trafficking protein
Alias_symbol (synonym)dJ453C12.4
Other aliasdJ453C12.4.1
HGNC (Hugo) SYS1
LocusID (NCBI) 90196
Atlas_Id 74428
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45363100 and ends at 45376802 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYS1 (20q13.12) / PSMD2 (3q27.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYS1   16162
Cards
Entrez_Gene (NCBI)SYS1  90196  SYS1, golgi trafficking protein
AliasesC20orf169; dJ453C12.4; dJ453C12.4.1
GeneCards (Weizmann)SYS1
Ensembl hg19 (Hinxton)ENSG00000204070 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204070 [Gene_View]  chr20:45363100-45376802 [Contig_View]  SYS1 [Vega]
ICGC DataPortalENSG00000204070
TCGA cBioPortalSYS1
AceView (NCBI)SYS1
Genatlas (Paris)SYS1
WikiGenes90196
SOURCE (Princeton)SYS1
Genetics Home Reference (NIH)SYS1
Genomic and cartography
GoldenPath hg38 (UCSC)SYS1  -     chr20:45363100-45376802 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYS1  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblSYS1 - 20q13.12 [CytoView hg19]  SYS1 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISYS1 [Mapview hg19]  SYS1 [Mapview hg38]
OMIM612979   
Gene and transcription
Genbank (Entrez)AI041176 AK075264 AK172738 AK309429 AL449491
RefSeq transcript (Entrez)NM_001099791 NM_001197129 NM_033542
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYS1
Cluster EST : UnigeneHs.733183 [ NCBI ]
CGAP (NCI)Hs.733183
Alternative Splicing GalleryENSG00000204070
Gene ExpressionSYS1 [ NCBI-GEO ]   SYS1 [ EBI - ARRAY_EXPRESS ]   SYS1 [ SEEK ]   SYS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90196
GTEX Portal (Tissue expression)SYS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2H4
Splice isoforms : SwissVarQ8N2H4
PhosPhoSitePlusQ8N2H4
Domains : Interpro (EBI)Integral_membrane_SYS1    Integral_membrane_SYS1-rel   
Domain families : Pfam (Sanger)SYS1 (PF09801)   
Domain families : Pfam (NCBI)pfam09801   
Conserved Domain (NCBI)SYS1
DMDM Disease mutations90196
Blocks (Seattle)SYS1
SuperfamilyQ8N2H4
Human Protein AtlasENSG00000204070
Peptide AtlasQ8N2H4
IPIIPI00395894   IPI00514416   IPI00642035   IPI00642594   IPI00924822   IPI00925039   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2H4
IntAct (EBI)Q8N2H4
FunCoupENSG00000204070
BioGRIDSYS1
STRING (EMBL)SYS1
ZODIACSYS1
Ontologies - Pathways
QuickGOQ8N2H4
Ontology : AmiGOprotein targeting to Golgi  trans-Golgi network  cytosol  Golgi to endosome transport  integral component of Golgi membrane  trans-Golgi network membrane  Golgi to plasma membrane protein transport  
Ontology : EGO-EBIprotein targeting to Golgi  trans-Golgi network  cytosol  Golgi to endosome transport  integral component of Golgi membrane  trans-Golgi network membrane  Golgi to plasma membrane protein transport  
NDEx NetworkSYS1
Atlas of Cancer Signalling NetworkSYS1
Wikipedia pathwaysSYS1
Orthology - Evolution
OrthoDB90196
GeneTree (enSembl)ENSG00000204070
Phylogenetic Trees/Animal Genes : TreeFamSYS1
HOVERGENQ8N2H4
HOGENOMQ8N2H4
Homologs : HomoloGeneSYS1
Homology/Alignments : Family Browser (UCSC)SYS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYS1
dbVarSYS1
ClinVarSYS1
1000_GenomesSYS1 
Exome Variant ServerSYS1
ExAC (Exome Aggregation Consortium)SYS1 (select the gene name)
Genetic variants : HAPMAP90196
Genomic Variants (DGV)SYS1 [DGVbeta]
DECIPHERSYS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYS1 
Mutations
ICGC Data PortalSYS1 
TCGA Data PortalSYS1 
Broad Tumor PortalSYS1
OASIS PortalSYS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYS1
DgiDB (Drug Gene Interaction Database)SYS1
DoCM (Curated mutations)SYS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYS1 (select a term)
intoGenSYS1
Cancer3DSYS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612979   
Orphanet
MedgenSYS1
Genetic Testing Registry SYS1
NextProtQ8N2H4 [Medical]
TSGene90196
GENETestsSYS1
Target ValidationSYS1
Huge Navigator SYS1 [HugePedia]
snp3D : Map Gene to Disease90196
BioCentury BCIQSYS1
ClinGenSYS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90196
Chemical/Pharm GKB GenePA162405119
Clinical trialSYS1
Miscellaneous
canSAR (ICR)SYS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYS1
EVEXSYS1
GoPubMedSYS1
iHOPSYS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:52 CEST 2017

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