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SYT10 (synaptotagmin 10)

Identity

Alias_namessynaptotagmin X
Other alias-
HGNC (Hugo) SYT10
LocusID (NCBI) 341359
Atlas_Id 56344
Location 12p11.1  [Link to chromosome band 12p11]
Location_base_pair Starts at 33528348 and ends at 33592754 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT10   19266
Cards
Entrez_Gene (NCBI)SYT10  341359  synaptotagmin 10
Aliases
GeneCards (Weizmann)SYT10
Ensembl hg19 (Hinxton)ENSG00000110975 [Gene_View]  chr12:33528348-33592754 [Contig_View]  SYT10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000110975 [Gene_View]  chr12:33528348-33592754 [Contig_View]  SYT10 [Vega]
ICGC DataPortalENSG00000110975
TCGA cBioPortalSYT10
AceView (NCBI)SYT10
Genatlas (Paris)SYT10
WikiGenes341359
SOURCE (Princeton)SYT10
Genetics Home Reference (NIH)SYT10
Genomic and cartography
GoldenPath hg19 (UCSC)SYT10  -     chr12:33528348-33592754 -  12p11.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SYT10  -     12p11.1   [Description]    (hg38-Dec_2013)
EnsemblSYT10 - 12p11.1 [CytoView hg19]  SYT10 - 12p11.1 [CytoView hg38]
Mapping of homologs : NCBISYT10 [Mapview hg19]  SYT10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_198992
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT10
Cluster EST : UnigeneHs.118703 [ NCBI ]
CGAP (NCI)Hs.118703
Alternative Splicing GalleryENSG00000110975
Gene ExpressionSYT10 [ NCBI-GEO ]   SYT10 [ EBI - ARRAY_EXPRESS ]   SYT10 [ SEEK ]   SYT10 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341359
GTEX Portal (Tissue expression)SYT10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XYQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XYQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XYQ8
Splice isoforms : SwissVarQ6XYQ8
PhosPhoSitePlusQ6XYQ8
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Synaptotagmin    SYT10   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT10
DMDM Disease mutations341359
Blocks (Seattle)SYT10
SuperfamilyQ6XYQ8
Human Protein AtlasENSG00000110975
Peptide AtlasQ6XYQ8
HPRD15460
IPIIPI00395601   IPI01010081   IPI01014843   
Protein Interaction databases
DIP (DOE-UCLA)Q6XYQ8
IntAct (EBI)Q6XYQ8
FunCoupENSG00000110975
BioGRIDSYT10
STRING (EMBL)SYT10
ZODIACSYT10
Ontologies - Pathways
QuickGOQ6XYQ8
Ontology : AmiGOphosphatidylserine binding  calcium ion binding  calcium ion binding  calcium-dependent phospholipid binding  phosphatidylinositol-4,5-bisphosphate binding  plasma membrane  vesicle fusion  chemical synaptic transmission  sensory perception of smell  integral component of membrane  synaptic vesicle exocytosis  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  transport vesicle membrane  protein homodimerization activity  positive regulation of calcium ion-dependent exocytosis  protein heterodimerization activity  calcium ion-regulated exocytosis of neurotransmitter  exocytic vesicle  exocytic vesicle  presynapse  
Ontology : EGO-EBIphosphatidylserine binding  calcium ion binding  calcium ion binding  calcium-dependent phospholipid binding  phosphatidylinositol-4,5-bisphosphate binding  plasma membrane  vesicle fusion  chemical synaptic transmission  sensory perception of smell  integral component of membrane  synaptic vesicle exocytosis  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  transport vesicle membrane  protein homodimerization activity  positive regulation of calcium ion-dependent exocytosis  protein heterodimerization activity  calcium ion-regulated exocytosis of neurotransmitter  exocytic vesicle  exocytic vesicle  presynapse  
NDEx NetworkSYT10
Atlas of Cancer Signalling NetworkSYT10
Wikipedia pathwaysSYT10
Orthology - Evolution
OrthoDB341359
GeneTree (enSembl)ENSG00000110975
Phylogenetic Trees/Animal Genes : TreeFamSYT10
HOVERGENQ6XYQ8
HOGENOMQ6XYQ8
Homologs : HomoloGeneSYT10
Homology/Alignments : Family Browser (UCSC)SYT10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT10
dbVarSYT10
ClinVarSYT10
1000_GenomesSYT10 
Exome Variant ServerSYT10
ExAC (Exome Aggregation Consortium)SYT10 (select the gene name)
Genetic variants : HAPMAP341359
Genomic Variants (DGV)SYT10 [DGVbeta]
DECIPHER (Syndromes)12:33528348-33592754  ENSG00000110975
CONAN: Copy Number AnalysisSYT10 
Mutations
ICGC Data PortalSYT10 
TCGA Data PortalSYT10 
Broad Tumor PortalSYT10
OASIS PortalSYT10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT10
DgiDB (Drug Gene Interaction Database)SYT10
DoCM (Curated mutations)SYT10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT10 (select a term)
intoGenSYT10
Cancer3DSYT10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSYT10
Genetic Testing Registry SYT10
NextProtQ6XYQ8 [Medical]
TSGene341359
GENETestsSYT10
Huge Navigator SYT10 [HugePedia]
snp3D : Map Gene to Disease341359
BioCentury BCIQSYT10
ClinGenSYT10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341359
Chemical/Pharm GKB GenePA134866255
Clinical trialSYT10
Miscellaneous
canSAR (ICR)SYT10 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT10
EVEXSYT10
GoPubMedSYT10
iHOPSYT10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:05 CET 2017

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