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SYT13 (synaptotagmin 13)

Identity

Alias_namessynaptotagmin XIII
Alias_symbol (synonym)KIAA1427
Other alias-
HGNC (Hugo) SYT13
LocusID (NCBI) 57586
Atlas_Id 50127
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 45240302 and ends at 45286333 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYT13 (11p11.2) / NPEPPS (17q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT13   14962
Cards
Entrez_Gene (NCBI)SYT13  57586  synaptotagmin 13
Aliases
GeneCards (Weizmann)SYT13
Ensembl hg19 (Hinxton)ENSG00000019505 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000019505 [Gene_View]  chr11:45240302-45286333 [Contig_View]  SYT13 [Vega]
ICGC DataPortalENSG00000019505
TCGA cBioPortalSYT13
AceView (NCBI)SYT13
Genatlas (Paris)SYT13
WikiGenes57586
SOURCE (Princeton)SYT13
Genetics Home Reference (NIH)SYT13
Genomic and cartography
GoldenPath hg38 (UCSC)SYT13  -     chr11:45240302-45286333 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT13  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblSYT13 - 11p11.2 [CytoView hg19]  SYT13 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBISYT13 [Mapview hg19]  SYT13 [Mapview hg38]
OMIM607716   
Gene and transcription
Genbank (Entrez)AB037848 AJ303362 AK291009 AK308841 AL512743
RefSeq transcript (Entrez)NM_001247987 NM_020826
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT13
Cluster EST : UnigeneHs.436643 [ NCBI ]
CGAP (NCI)Hs.436643
Alternative Splicing GalleryENSG00000019505
Gene ExpressionSYT13 [ NCBI-GEO ]   SYT13 [ EBI - ARRAY_EXPRESS ]   SYT13 [ SEEK ]   SYT13 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57586
GTEX Portal (Tissue expression)SYT13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L8C5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L8C5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L8C5
Splice isoforms : SwissVarQ7L8C5
PhosPhoSitePlusQ7L8C5
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    SYT13   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT13
DMDM Disease mutations57586
Blocks (Seattle)SYT13
PDB (SRS)1WFM   
PDB (PDBSum)1WFM   
PDB (IMB)1WFM   
PDB (RSDB)1WFM   
Structural Biology KnowledgeBase1WFM   
SCOP (Structural Classification of Proteins)1WFM   
CATH (Classification of proteins structures)1WFM   
SuperfamilyQ7L8C5
Human Protein AtlasENSG00000019505
Peptide AtlasQ7L8C5
HPRD12128
IPIIPI00026638   IPI00984240   IPI00983670   
Protein Interaction databases
DIP (DOE-UCLA)Q7L8C5
IntAct (EBI)Q7L8C5
FunCoupENSG00000019505
BioGRIDSYT13
STRING (EMBL)SYT13
ZODIACSYT13
Ontologies - Pathways
QuickGOQ7L8C5
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  integral component of plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  transport vesicle  clathrin binding  intracellular membrane-bounded organelle  calcium ion-regulated exocytosis of neurotransmitter  presynapse  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  integral component of plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  transport vesicle  clathrin binding  intracellular membrane-bounded organelle  calcium ion-regulated exocytosis of neurotransmitter  presynapse  
NDEx NetworkSYT13
Atlas of Cancer Signalling NetworkSYT13
Wikipedia pathwaysSYT13
Orthology - Evolution
OrthoDB57586
GeneTree (enSembl)ENSG00000019505
Phylogenetic Trees/Animal Genes : TreeFamSYT13
HOVERGENQ7L8C5
HOGENOMQ7L8C5
Homologs : HomoloGeneSYT13
Homology/Alignments : Family Browser (UCSC)SYT13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT13
dbVarSYT13
ClinVarSYT13
1000_GenomesSYT13 
Exome Variant ServerSYT13
ExAC (Exome Aggregation Consortium)SYT13 (select the gene name)
Genetic variants : HAPMAP57586
Genomic Variants (DGV)SYT13 [DGVbeta]
DECIPHERSYT13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT13 
Mutations
ICGC Data PortalSYT13 
TCGA Data PortalSYT13 
Broad Tumor PortalSYT13
OASIS PortalSYT13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT13
DgiDB (Drug Gene Interaction Database)SYT13
DoCM (Curated mutations)SYT13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT13 (select a term)
intoGenSYT13
Cancer3DSYT13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607716   
Orphanet
MedgenSYT13
Genetic Testing Registry SYT13
NextProtQ7L8C5 [Medical]
TSGene57586
GENETestsSYT13
Target ValidationSYT13
Huge Navigator SYT13 [HugePedia]
snp3D : Map Gene to Disease57586
BioCentury BCIQSYT13
ClinGenSYT13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57586
Chemical/Pharm GKB GenePA37942
Clinical trialSYT13
Miscellaneous
canSAR (ICR)SYT13 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT13
EVEXSYT13
GoPubMedSYT13
iHOPSYT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:20 CEST 2017

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