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SYT14 (synaptotagmin 14)

Identity

Alias_namessynaptotagmin XIV
Alias_symbol (synonym)sytXIV
FLJ34198
Other aliasSCAR11
HGNC (Hugo) SYT14
LocusID (NCBI) 255928
Atlas_Id 56240
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 209938174 and ends at 210164288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYT14 (1q32.2) / ANKHD1 (5q31.3)SYT14 (1q32.2) / SPINK1 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT14   23143
Cards
Entrez_Gene (NCBI)SYT14  255928  synaptotagmin 14
AliasesSCAR11; sytXIV
GeneCards (Weizmann)SYT14
Ensembl hg19 (Hinxton)ENSG00000143469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143469 [Gene_View]  chr1:209938174-210164288 [Contig_View]  SYT14 [Vega]
ICGC DataPortalENSG00000143469
TCGA cBioPortalSYT14
AceView (NCBI)SYT14
Genatlas (Paris)SYT14
WikiGenes255928
SOURCE (Princeton)SYT14
Genetics Home Reference (NIH)SYT14
Genomic and cartography
GoldenPath hg38 (UCSC)SYT14  -     chr1:209938174-210164288 +  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT14  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblSYT14 - 1q32.2 [CytoView hg19]  SYT14 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBISYT14 [Mapview hg19]  SYT14 [Mapview hg38]
OMIM610949   614229   
Gene and transcription
Genbank (Entrez)AB102948 AJ617623 AJ617624 AJ617625 AJ617626
RefSeq transcript (Entrez)NM_001146261 NM_001146262 NM_001146264 NM_001256006 NM_153262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT14
Cluster EST : UnigeneHs.658866 [ NCBI ]
CGAP (NCI)Hs.658866
Alternative Splicing GalleryENSG00000143469
Gene ExpressionSYT14 [ NCBI-GEO ]   SYT14 [ EBI - ARRAY_EXPRESS ]   SYT14 [ SEEK ]   SYT14 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255928
GTEX Portal (Tissue expression)SYT14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NB59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NB59
Splice isoforms : SwissVarQ8NB59
PhosPhoSitePlusQ8NB59
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    SYT14   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT14
DMDM Disease mutations255928
Blocks (Seattle)SYT14
SuperfamilyQ8NB59
Human Protein AtlasENSG00000143469
Peptide AtlasQ8NB59
HPRD11617
IPIIPI00168143   IPI00470678   IPI00470679   IPI01010442   IPI00844485   IPI00470677   IPI00470681   IPI00929506   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB59
IntAct (EBI)Q8NB59
FunCoupENSG00000143469
BioGRIDSYT14
STRING (EMBL)SYT14
ZODIACSYT14
Ontologies - Pathways
QuickGOQ8NB59
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  
NDEx NetworkSYT14
Atlas of Cancer Signalling NetworkSYT14
Wikipedia pathwaysSYT14
Orthology - Evolution
OrthoDB255928
GeneTree (enSembl)ENSG00000143469
Phylogenetic Trees/Animal Genes : TreeFamSYT14
HOVERGENQ8NB59
HOGENOMQ8NB59
Homologs : HomoloGeneSYT14
Homology/Alignments : Family Browser (UCSC)SYT14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT14
dbVarSYT14
ClinVarSYT14
1000_GenomesSYT14 
Exome Variant ServerSYT14
ExAC (Exome Aggregation Consortium)SYT14 (select the gene name)
Genetic variants : HAPMAP255928
Genomic Variants (DGV)SYT14 [DGVbeta]
DECIPHERSYT14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT14 
Mutations
ICGC Data PortalSYT14 
TCGA Data PortalSYT14 
Broad Tumor PortalSYT14
OASIS PortalSYT14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT14
DgiDB (Drug Gene Interaction Database)SYT14
DoCM (Curated mutations)SYT14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT14 (select a term)
intoGenSYT14
Cancer3DSYT14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610949    614229   
Orphanet20590   
MedgenSYT14
Genetic Testing Registry SYT14
NextProtQ8NB59 [Medical]
TSGene255928
GENETestsSYT14
Target ValidationSYT14
Huge Navigator SYT14 [HugePedia]
snp3D : Map Gene to Disease255928
BioCentury BCIQSYT14
ClinGenSYT14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255928
Chemical/Pharm GKB GenePA134887689
Clinical trialSYT14
Miscellaneous
canSAR (ICR)SYT14 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT14
EVEXSYT14
GoPubMedSYT14
iHOPSYT14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:21 CEST 2017

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