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SYT14P1 (synaptotagmin 14 pseudogene 1)

Identity

Alias_namesSYT14L
synaptotagmin XIV-like
synaptotagmin XIV pseudogene 1
Alias_symbol (synonym)SYTDEP
CHR415SYT
Other alias
HGNC (Hugo) SYT14P1
LocusID (NCBI) 401135
Atlas_Id 54053
Location 4q13.2  [Link to chromosome band 4q13]
Location_base_pair Starts at 68928259 and ends at 68928690 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT14P1   33429
Cards
Entrez_Gene (NCBI)SYT14P1  401135  synaptotagmin 14 pseudogene 1
AliasesCHR415SYT; SYT14L; SYTDEP
GeneCards (Weizmann)SYT14P1
Ensembl hg19 (Hinxton) [Gene_View]  chr4:68928259-68928690 [Contig_View]  SYT14P1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:68928259-68928690 [Contig_View]  SYT14P1 [Vega]
TCGA cBioPortalSYT14P1
AceView (NCBI)SYT14P1
Genatlas (Paris)SYT14P1
WikiGenes401135
SOURCE (Princeton)SYT14P1
Genetics Home Reference (NIH)SYT14P1
Genomic and cartography
GoldenPath hg19 (UCSC)SYT14P1  -     chr4:68928259-68928690 -  4q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SYT14P1  -     4q13.2   [Description]    (hg38-Dec_2013)
EnsemblSYT14P1 - 4q13.2 [CytoView hg19]  SYT14P1 - 4q13.2 [CytoView hg38]
Mapping of homologs : NCBISYT14P1 [Mapview hg19]  SYT14P1 [Mapview hg38]
OMIM610892   
Gene and transcription
Genbank (Entrez)AJ303368 AY954513 BC132697 BC144378 CR740599
RefSeq transcript (Entrez)NM_001014372
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)SYT14P1
Cluster EST : UnigeneHs.712109 [ NCBI ]
CGAP (NCI)Hs.712109
Gene ExpressionSYT14P1 [ NCBI-GEO ]   SYT14P1 [ EBI - ARRAY_EXPRESS ]   SYT14P1 [ SEEK ]   SYT14P1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT14P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401135
GTEX Portal (Tissue expression)SYT14P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58G82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58G82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58G82
Splice isoforms : SwissVarQ58G82
PhosPhoSitePlusQ58G82
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    SYT14   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT14P1
DMDM Disease mutations401135
Blocks (Seattle)SYT14P1
SuperfamilyQ58G82
Peptide AtlasQ58G82
HPRD18501
IPIIPI00304787   IPI00847215   
Protein Interaction databases
DIP (DOE-UCLA)Q58G82
IntAct (EBI)Q58G82
BioGRIDSYT14P1
STRING (EMBL)SYT14P1
ZODIACSYT14P1
Ontologies - Pathways
QuickGOQ58G82
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  positive regulation of CREB transcription factor activity  calcium ion-regulated exocytosis of neurotransmitter  positive regulation of ERK1 and ERK2 cascade  positive regulation of dendrite extension  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  positive regulation of CREB transcription factor activity  calcium ion-regulated exocytosis of neurotransmitter  positive regulation of ERK1 and ERK2 cascade  positive regulation of dendrite extension  
NDEx NetworkSYT14P1
Atlas of Cancer Signalling NetworkSYT14P1
Wikipedia pathwaysSYT14P1
Orthology - Evolution
OrthoDB401135
Phylogenetic Trees/Animal Genes : TreeFamSYT14P1
HOVERGENQ58G82
HOGENOMQ58G82
Homologs : HomoloGeneSYT14P1
Homology/Alignments : Family Browser (UCSC)SYT14P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT14P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT14P1
dbVarSYT14P1
ClinVarSYT14P1
1000_GenomesSYT14P1 
Exome Variant ServerSYT14P1
ExAC (Exome Aggregation Consortium)SYT14P1 (select the gene name)
Genetic variants : HAPMAP401135
Genomic Variants (DGV)SYT14P1 [DGVbeta]
DECIPHER (Syndromes)4:68928259-68928690  
CONAN: Copy Number AnalysisSYT14P1 
Mutations
ICGC Data PortalSYT14P1 
TCGA Data PortalSYT14P1 
Broad Tumor PortalSYT14P1
OASIS PortalSYT14P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSYT14P1
BioMutasearch SYT14P1
DgiDB (Drug Gene Interaction Database)SYT14P1
DoCM (Curated mutations)SYT14P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT14P1 (select a term)
intoGenSYT14P1
Cancer3DSYT14P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610892   
Orphanet
MedgenSYT14P1
Genetic Testing Registry SYT14P1
NextProtQ58G82 [Medical]
TSGene401135
GENETestsSYT14P1
Huge Navigator SYT14P1 [HugePedia]
snp3D : Map Gene to Disease401135
BioCentury BCIQSYT14P1
ClinGenSYT14P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401135
Clinical trialSYT14P1
Miscellaneous
canSAR (ICR)SYT14P1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT14P1
EVEXSYT14P1
GoPubMedSYT14P1
iHOPSYT14P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:21:38 CEST 2017

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