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SYT15 (synaptotagmin 15)

Identity

Alias (NCBI)CHR10SYT
sytXV
HGNC (Hugo) SYT15
HGNC Alias symbCHR10SYT
HGNC Previous namesynaptotagmin XV
LocusID (NCBI) 83849
Atlas_Id 56544
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 46579128 and ends at 46594172 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SYT15 (10q11.22) / LOC728190 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SYT15   17167
Cards
Entrez_Gene (NCBI)SYT15    synaptotagmin 15
AliasesCHR10SYT; sytXV
GeneCards (Weizmann)SYT15
Ensembl hg19 (Hinxton)ENSG00000204176 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204176 [Gene_View]  ENSG00000204176 [Sequence]  chr10:46579128-46594172 [Contig_View]  SYT15 [Vega]
ICGC DataPortalENSG00000204176
TCGA cBioPortalSYT15
AceView (NCBI)SYT15
Genatlas (Paris)SYT15
SOURCE (Princeton)SYT15
Genetics Home Reference (NIH)SYT15
Genomic and cartography
GoldenPath hg38 (UCSC)SYT15  -     chr10:46579128-46594172 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT15  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathSYT15 - 10q11.22 [CytoView hg19]  SYT15 - 10q11.22 [CytoView hg38]
ImmunoBaseENSG00000204176
Genome Data Viewer NCBISYT15 [Mapview hg19]  
OMIM608081   
Gene and transcription
Genbank (Entrez)AA878734 AB109022 AB109023 AI971263 AJ303363
RefSeq transcript (Entrez)NM_031912 NM_181519
Consensus coding sequences : CCDS (NCBI)SYT15
Gene ExpressionSYT15 [ NCBI-GEO ]   SYT15 [ EBI - ARRAY_EXPRESS ]   SYT15 [ SEEK ]   SYT15 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT15 [ Firebrowse - Broad ]
GenevisibleExpression of SYT15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83849
GTEX Portal (Tissue expression)SYT15
Human Protein AtlasENSG00000204176-SYT15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQS2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQS2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQS2
PhosPhoSitePlusQ9BQS2
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    C2_domain_sf    SYT15   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT15
SuperfamilyQ9BQS2
AlphaFold pdb e-kbQ9BQS2   
Human Protein Atlas [tissue]ENSG00000204176-SYT15 [tissue]
HPRD12161
Protein Interaction databases
DIP (DOE-UCLA)Q9BQS2
IntAct (EBI)Q9BQS2
BioGRIDSYT15
STRING (EMBL)SYT15
ZODIACSYT15
Ontologies - Pathways
QuickGOQ9BQS2
Ontology : AmiGOSNARE binding  phosphatidylserine binding  calcium ion binding  calcium-dependent phospholipid binding  plasma membrane  regulation of dopamine secretion  integral component of membrane  vesicle-mediated transport  calcium-ion regulated exocytosis  regulation of calcium ion-dependent exocytosis  clathrin binding  exocytic vesicle  cellular response to calcium ion  
Ontology : EGO-EBISNARE binding  phosphatidylserine binding  calcium ion binding  calcium-dependent phospholipid binding  plasma membrane  regulation of dopamine secretion  integral component of membrane  vesicle-mediated transport  calcium-ion regulated exocytosis  regulation of calcium ion-dependent exocytosis  clathrin binding  exocytic vesicle  cellular response to calcium ion  
NDEx NetworkSYT15
Atlas of Cancer Signalling NetworkSYT15
Wikipedia pathwaysSYT15
Orthology - Evolution
OrthoDB83849
GeneTree (enSembl)ENSG00000204176
Phylogenetic Trees/Animal Genes : TreeFamSYT15
Homologs : HomoloGeneSYT15
Homology/Alignments : Family Browser (UCSC)SYT15
Gene fusions - Rearrangements
Fusion : QuiverSYT15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT15
dbVarSYT15
ClinVarSYT15
MonarchSYT15
1000_GenomesSYT15 
Exome Variant ServerSYT15
GNOMAD BrowserENSG00000204176
Varsome BrowserSYT15
ACMGSYT15 variants
VarityQ9BQS2
Genomic Variants (DGV)SYT15 [DGVbeta]
DECIPHERSYT15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT15 
Mutations
ICGC Data PortalSYT15 
TCGA Data PortalSYT15 
Broad Tumor PortalSYT15
OASIS PortalSYT15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSYT15
Mutations and Diseases : HGMDSYT15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSYT15
DgiDB (Drug Gene Interaction Database)SYT15
DoCM (Curated mutations)SYT15
CIViC (Clinical Interpretations of Variants in Cancer)SYT15
Cancer3DSYT15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608081   
Orphanet
DisGeNETSYT15
MedgenSYT15
Genetic Testing Registry SYT15
NextProtQ9BQS2 [Medical]
GENETestsSYT15
Target ValidationSYT15
Huge Navigator SYT15 [HugePedia]
ClinGenSYT15
Clinical trials, drugs, therapy
MyCancerGenomeSYT15
Protein Interactions : CTDSYT15
Pharm GKB GenePA134921618
PharosQ9BQS2
Clinical trialSYT15
Miscellaneous
canSAR (ICR)SYT15
HarmonizomeSYT15
DataMed IndexSYT15
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSYT15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:03 CEST 2021

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