Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYT15 (synaptotagmin 15)

Identity

Alias_namessynaptotagmin XV
Alias_symbol (synonym)CHR10SYT
Other aliassytXV
HGNC (Hugo) SYT15
LocusID (NCBI) 83849
Atlas_Id 56544
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 46579016 and ends at 46591736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SYT15 (10q11.22) / LOC728190 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT15   17167
Cards
Entrez_Gene (NCBI)SYT15  83849  synaptotagmin 15
AliasesCHR10SYT; sytXV
GeneCards (Weizmann)SYT15
Ensembl hg19 (Hinxton)ENSG00000204176 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204176 [Gene_View]  chr10:46579016-46591736 [Contig_View]  SYT15 [Vega]
ICGC DataPortalENSG00000204176
TCGA cBioPortalSYT15
AceView (NCBI)SYT15
Genatlas (Paris)SYT15
WikiGenes83849
SOURCE (Princeton)SYT15
Genetics Home Reference (NIH)SYT15
Genomic and cartography
GoldenPath hg38 (UCSC)SYT15  -     chr10:46579016-46591736 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT15  -     10q11.22   [Description]    (hg19-Feb_2009)
EnsemblSYT15 - 10q11.22 [CytoView hg19]  SYT15 - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBISYT15 [Mapview hg19]  SYT15 [Mapview hg38]
OMIM608081   
Gene and transcription
Genbank (Entrez)AA878734 AB109022 AB109023 AI971263 AJ303363
RefSeq transcript (Entrez)NM_031912 NM_181519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT15
Cluster EST : UnigeneHs.696346 [ NCBI ]
CGAP (NCI)Hs.696346
Alternative Splicing GalleryENSG00000204176
Gene ExpressionSYT15 [ NCBI-GEO ]   SYT15 [ EBI - ARRAY_EXPRESS ]   SYT15 [ SEEK ]   SYT15 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83849
GTEX Portal (Tissue expression)SYT15
Human Protein AtlasENSG00000204176-SYT15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQS2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQS2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQS2
Splice isoforms : SwissVarQ9BQS2
PhosPhoSitePlusQ9BQS2
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    SYT15   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT15
DMDM Disease mutations83849
Blocks (Seattle)SYT15
SuperfamilyQ9BQS2
Human Protein Atlas [tissue]ENSG00000204176-SYT15 [tissue]
Peptide AtlasQ9BQS2
HPRD12161
IPIIPI00456763   IPI00376930   IPI00376931   IPI00473053   IPI00910051   IPI00965217   IPI00477020   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQS2
IntAct (EBI)Q9BQS2
FunCoupENSG00000204176
BioGRIDSYT15
STRING (EMBL)SYT15
ZODIACSYT15
Ontologies - Pathways
QuickGOQ9BQS2
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  presynapse  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  presynapse  
NDEx NetworkSYT15
Atlas of Cancer Signalling NetworkSYT15
Wikipedia pathwaysSYT15
Orthology - Evolution
OrthoDB83849
GeneTree (enSembl)ENSG00000204176
Phylogenetic Trees/Animal Genes : TreeFamSYT15
HOVERGENQ9BQS2
HOGENOMQ9BQS2
Homologs : HomoloGeneSYT15
Homology/Alignments : Family Browser (UCSC)SYT15
Gene fusions - Rearrangements
Tumor Fusion PortalSYT15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT15
dbVarSYT15
ClinVarSYT15
1000_GenomesSYT15 
Exome Variant ServerSYT15
ExAC (Exome Aggregation Consortium)ENSG00000204176
GNOMAD BrowserENSG00000204176
Genetic variants : HAPMAP83849
Genomic Variants (DGV)SYT15 [DGVbeta]
DECIPHERSYT15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT15 
Mutations
ICGC Data PortalSYT15 
TCGA Data PortalSYT15 
Broad Tumor PortalSYT15
OASIS PortalSYT15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT15
DgiDB (Drug Gene Interaction Database)SYT15
DoCM (Curated mutations)SYT15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT15 (select a term)
intoGenSYT15
Cancer3DSYT15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608081   
Orphanet
DisGeNETSYT15
MedgenSYT15
Genetic Testing Registry SYT15
NextProtQ9BQS2 [Medical]
TSGene83849
GENETestsSYT15
Target ValidationSYT15
Huge Navigator SYT15 [HugePedia]
snp3D : Map Gene to Disease83849
BioCentury BCIQSYT15
ClinGenSYT15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83849
Chemical/Pharm GKB GenePA134921618
Clinical trialSYT15
Miscellaneous
canSAR (ICR)SYT15 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT15
EVEXSYT15
GoPubMedSYT15
iHOPSYT15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 21:01:48 CET 2017

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