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SYT16 (synaptotagmin 16)

Identity

Alias_namesSYT14L
synaptotagmin XIV-like
synaptotagmin XVI
Alias_symbol (synonym)yt14r
CHR14SYT
Strep14
Other aliassyt14r
HGNC (Hugo) SYT16
LocusID (NCBI) 83851
Atlas_Id 56164
Location 14q23.2  [Link to chromosome band 14q23]
Location_base_pair Starts at 61995823 and ends at 62101709 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT16   23142
Cards
Entrez_Gene (NCBI)SYT16  83851  synaptotagmin 16
AliasesCHR14SYT; SYT14L; Strep14; syt14r; 
yt14r
GeneCards (Weizmann)SYT16
Ensembl hg19 (Hinxton)ENSG00000139973 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139973 [Gene_View]  chr14:61995823-62101709 [Contig_View]  SYT16 [Vega]
ICGC DataPortalENSG00000139973
TCGA cBioPortalSYT16
AceView (NCBI)SYT16
Genatlas (Paris)SYT16
WikiGenes83851
SOURCE (Princeton)SYT16
Genetics Home Reference (NIH)SYT16
Genomic and cartography
GoldenPath hg38 (UCSC)SYT16  -     chr14:61995823-62101709 +  14q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT16  -     14q23.2   [Description]    (hg19-Feb_2009)
EnsemblSYT16 - 14q23.2 [CytoView hg19]  SYT16 - 14q23.2 [CytoView hg38]
Mapping of homologs : NCBISYT16 [Mapview hg19]  SYT16 [Mapview hg38]
OMIM610950   
Gene and transcription
Genbank (Entrez)AB102949 AJ303367 AJ617628 AK055647 AK302919
RefSeq transcript (Entrez)NM_031914
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT16
Cluster EST : UnigeneHs.713240 [ NCBI ]
CGAP (NCI)Hs.713240
Alternative Splicing GalleryENSG00000139973
Gene ExpressionSYT16 [ NCBI-GEO ]   SYT16 [ EBI - ARRAY_EXPRESS ]   SYT16 [ SEEK ]   SYT16 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83851
GTEX Portal (Tissue expression)SYT16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RD7
Splice isoforms : SwissVarQ17RD7
PhosPhoSitePlusQ17RD7
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    SYT16   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT16
DMDM Disease mutations83851
Blocks (Seattle)SYT16
SuperfamilyQ17RD7
Human Protein AtlasENSG00000139973
Peptide AtlasQ17RD7
HPRD15461
IPIIPI00784357   IPI00479616   IPI00790753   IPI00910434   
Protein Interaction databases
DIP (DOE-UCLA)Q17RD7
IntAct (EBI)Q17RD7
FunCoupENSG00000139973
BioGRIDSYT16
STRING (EMBL)SYT16
ZODIACSYT16
Ontologies - Pathways
QuickGOQ17RD7
Ontology : AmiGOcalcium ion binding  protein binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  protein homodimerization activity  protein heterodimerization activity  calcium ion-regulated exocytosis of neurotransmitter  
Ontology : EGO-EBIcalcium ion binding  protein binding  calcium-dependent phospholipid binding  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  protein homodimerization activity  protein heterodimerization activity  calcium ion-regulated exocytosis of neurotransmitter  
NDEx NetworkSYT16
Atlas of Cancer Signalling NetworkSYT16
Wikipedia pathwaysSYT16
Orthology - Evolution
OrthoDB83851
GeneTree (enSembl)ENSG00000139973
Phylogenetic Trees/Animal Genes : TreeFamSYT16
HOVERGENQ17RD7
HOGENOMQ17RD7
Homologs : HomoloGeneSYT16
Homology/Alignments : Family Browser (UCSC)SYT16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT16
dbVarSYT16
ClinVarSYT16
1000_GenomesSYT16 
Exome Variant ServerSYT16
ExAC (Exome Aggregation Consortium)SYT16 (select the gene name)
Genetic variants : HAPMAP83851
Genomic Variants (DGV)SYT16 [DGVbeta]
DECIPHERSYT16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT16 
Mutations
ICGC Data PortalSYT16 
TCGA Data PortalSYT16 
Broad Tumor PortalSYT16
OASIS PortalSYT16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT16
DgiDB (Drug Gene Interaction Database)SYT16
DoCM (Curated mutations)SYT16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT16 (select a term)
intoGenSYT16
Cancer3DSYT16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610950   
Orphanet
MedgenSYT16
Genetic Testing Registry SYT16
NextProtQ17RD7 [Medical]
TSGene83851
GENETestsSYT16
Target ValidationSYT16
Huge Navigator SYT16 [HugePedia]
snp3D : Map Gene to Disease83851
BioCentury BCIQSYT16
ClinGenSYT16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83851
Chemical/Pharm GKB GenePA134964250
Clinical trialSYT16
Miscellaneous
canSAR (ICR)SYT16 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT16
EVEXSYT16
GoPubMedSYT16
iHOPSYT16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:21 CEST 2017

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