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SYT17 (synaptotagmin 17)

Identity

Alias_namessynaptotagmin XVII
Other aliassytXVII
HGNC (Hugo) SYT17
LocusID (NCBI) 51760
Atlas_Id 56586
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19172357 and ends at 19268334 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP2C1 (3q22.1) / SYT17 (16p12.3)RIN2 (20p11.23) / SYT17 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT17   24119
Cards
Entrez_Gene (NCBI)SYT17  51760  synaptotagmin 17
AliasessytXVII
GeneCards (Weizmann)SYT17
Ensembl hg19 (Hinxton)ENSG00000103528 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103528 [Gene_View]  chr16:19172357-19268334 [Contig_View]  SYT17 [Vega]
ICGC DataPortalENSG00000103528
TCGA cBioPortalSYT17
AceView (NCBI)SYT17
Genatlas (Paris)SYT17
WikiGenes51760
SOURCE (Princeton)SYT17
Genetics Home Reference (NIH)SYT17
Genomic and cartography
GoldenPath hg38 (UCSC)SYT17  -     chr16:19172357-19268334 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT17  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblSYT17 - 16p12.3 [CytoView hg19]  SYT17 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBISYT17 [Mapview hg19]  SYT17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA705977 AF220560 AK098747 AK226136 AK296000
RefSeq transcript (Entrez)NM_001308157 NM_001330509 NM_016524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT17
Cluster EST : UnigeneHs.733095 [ NCBI ]
CGAP (NCI)Hs.733095
Alternative Splicing GalleryENSG00000103528
Gene ExpressionSYT17 [ NCBI-GEO ]   SYT17 [ EBI - ARRAY_EXPRESS ]   SYT17 [ SEEK ]   SYT17 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51760
GTEX Portal (Tissue expression)SYT17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSW7
Splice isoforms : SwissVarQ9BSW7
PhosPhoSitePlusQ9BSW7
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Synaptotagmin    SYT17   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT17
DMDM Disease mutations51760
Blocks (Seattle)SYT17
PDB (SRS)2ENP   
PDB (PDBSum)2ENP   
PDB (IMB)2ENP   
PDB (RSDB)2ENP   
Structural Biology KnowledgeBase2ENP   
SCOP (Structural Classification of Proteins)2ENP   
CATH (Classification of proteins structures)2ENP   
SuperfamilyQ9BSW7
Human Protein AtlasENSG00000103528
Peptide AtlasQ9BSW7
HPRD17425
IPIIPI00305536   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSW7
IntAct (EBI)Q9BSW7
FunCoupENSG00000103528
BioGRIDSYT17
STRING (EMBL)SYT17
ZODIACSYT17
Ontologies - Pathways
QuickGOQ9BSW7
Ontology : AmiGOcalcium ion binding  protein binding  calcium-dependent phospholipid binding  trans-Golgi network  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  presynapse  positive regulation of dendrite extension  
Ontology : EGO-EBIcalcium ion binding  protein binding  calcium-dependent phospholipid binding  trans-Golgi network  plasma membrane  vesicle fusion  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  calcium ion-regulated exocytosis of neurotransmitter  presynapse  positive regulation of dendrite extension  
NDEx NetworkSYT17
Atlas of Cancer Signalling NetworkSYT17
Wikipedia pathwaysSYT17
Orthology - Evolution
OrthoDB51760
GeneTree (enSembl)ENSG00000103528
Phylogenetic Trees/Animal Genes : TreeFamSYT17
HOVERGENQ9BSW7
HOGENOMQ9BSW7
Homologs : HomoloGeneSYT17
Homology/Alignments : Family Browser (UCSC)SYT17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT17
dbVarSYT17
ClinVarSYT17
1000_GenomesSYT17 
Exome Variant ServerSYT17
ExAC (Exome Aggregation Consortium)SYT17 (select the gene name)
Genetic variants : HAPMAP51760
Genomic Variants (DGV)SYT17 [DGVbeta]
DECIPHERSYT17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT17 
Mutations
ICGC Data PortalSYT17 
TCGA Data PortalSYT17 
Broad Tumor PortalSYT17
OASIS PortalSYT17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT17
DgiDB (Drug Gene Interaction Database)SYT17
DoCM (Curated mutations)SYT17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT17 (select a term)
intoGenSYT17
Cancer3DSYT17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSYT17
Genetic Testing Registry SYT17
NextProtQ9BSW7 [Medical]
TSGene51760
GENETestsSYT17
Target ValidationSYT17
Huge Navigator SYT17 [HugePedia]
snp3D : Map Gene to Disease51760
BioCentury BCIQSYT17
ClinGenSYT17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51760
Chemical/Pharm GKB GenePA142670841
Clinical trialSYT17
Miscellaneous
canSAR (ICR)SYT17 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT17
EVEXSYT17
GoPubMedSYT17
iHOPSYT17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:15 CEST 2017

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