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SYT3 (synaptotagmin 3)

Identity

Alias_namessynaptotagmin III
Other aliasSytIII
HGNC (Hugo) SYT3
LocusID (NCBI) 84258
Atlas_Id 56401
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50621977 and ends at 50639835 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MED27 (9q34.13) / SYT3 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT3   11511
Cards
Entrez_Gene (NCBI)SYT3  84258  synaptotagmin 3
AliasesSytIII
GeneCards (Weizmann)SYT3
Ensembl hg19 (Hinxton)ENSG00000213023 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213023 [Gene_View]  chr19:50621977-50639835 [Contig_View]  SYT3 [Vega]
ICGC DataPortalENSG00000213023
TCGA cBioPortalSYT3
AceView (NCBI)SYT3
Genatlas (Paris)SYT3
WikiGenes84258
SOURCE (Princeton)SYT3
Genetics Home Reference (NIH)SYT3
Genomic and cartography
GoldenPath hg38 (UCSC)SYT3  -     chr19:50621977-50639835 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT3  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblSYT3 - 19q13.33 [CytoView hg19]  SYT3 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISYT3 [Mapview hg19]  SYT3 [Mapview hg38]
OMIM600327   
Gene and transcription
Genbank (Entrez)AL136594 AM393522 BC028379 BC031067 BI912995
RefSeq transcript (Entrez)NM_001160328 NM_001160329 NM_032298
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT3
Cluster EST : UnigeneHs.515554 [ NCBI ]
CGAP (NCI)Hs.515554
Alternative Splicing GalleryENSG00000213023
Gene ExpressionSYT3 [ NCBI-GEO ]   SYT3 [ EBI - ARRAY_EXPRESS ]   SYT3 [ SEEK ]   SYT3 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84258
GTEX Portal (Tissue expression)SYT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQG1
Splice isoforms : SwissVarQ9BQG1
PhosPhoSitePlusQ9BQG1
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Synaptotagmin    SYT3   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT3
DMDM Disease mutations84258
Blocks (Seattle)SYT3
SuperfamilyQ9BQG1
Human Protein AtlasENSG00000213023
Peptide AtlasQ9BQG1
HPRD08977
IPIIPI00031100   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQG1
IntAct (EBI)Q9BQG1
FunCoupENSG00000213023
BioGRIDSYT3
STRING (EMBL)SYT3
ZODIACSYT3
Ontologies - Pathways
QuickGOQ9BQG1
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  calcium-dependent phospholipid binding  endosome  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  transport vesicle membrane  calcium ion-regulated exocytosis of neurotransmitter  presynapse  positive regulation of dendrite extension  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  calcium-dependent phospholipid binding  endosome  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  clathrin binding  transport vesicle membrane  calcium ion-regulated exocytosis of neurotransmitter  presynapse  positive regulation of dendrite extension  
NDEx NetworkSYT3
Atlas of Cancer Signalling NetworkSYT3
Wikipedia pathwaysSYT3
Orthology - Evolution
OrthoDB84258
GeneTree (enSembl)ENSG00000213023
Phylogenetic Trees/Animal Genes : TreeFamSYT3
HOVERGENQ9BQG1
HOGENOMQ9BQG1
Homologs : HomoloGeneSYT3
Homology/Alignments : Family Browser (UCSC)SYT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT3
dbVarSYT3
ClinVarSYT3
1000_GenomesSYT3 
Exome Variant ServerSYT3
ExAC (Exome Aggregation Consortium)SYT3 (select the gene name)
Genetic variants : HAPMAP84258
Genomic Variants (DGV)SYT3 [DGVbeta]
DECIPHERSYT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT3 
Mutations
ICGC Data PortalSYT3 
TCGA Data PortalSYT3 
Broad Tumor PortalSYT3
OASIS PortalSYT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT3
DgiDB (Drug Gene Interaction Database)SYT3
DoCM (Curated mutations)SYT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT3 (select a term)
intoGenSYT3
Cancer3DSYT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600327   
Orphanet
MedgenSYT3
Genetic Testing Registry SYT3
NextProtQ9BQG1 [Medical]
TSGene84258
GENETestsSYT3
Target ValidationSYT3
Huge Navigator SYT3 [HugePedia]
snp3D : Map Gene to Disease84258
BioCentury BCIQSYT3
ClinGenSYT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84258
Chemical/Pharm GKB GenePA36292
Clinical trialSYT3
Miscellaneous
canSAR (ICR)SYT3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT3
EVEXSYT3
GoPubMedSYT3
iHOPSYT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:16 CEST 2017

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