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SYT5 (synaptotagmin 5)

Identity

Alias_namessynaptotagmin V
Other alias-
HGNC (Hugo) SYT5
LocusID (NCBI) 6861
Atlas_Id 46488
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55684464 and ends at 55690811 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT5   11513
Cards
Entrez_Gene (NCBI)SYT5  6861  synaptotagmin 5
Aliases
GeneCards (Weizmann)SYT5
Ensembl hg19 (Hinxton)ENSG00000129990 [Gene_View]  chr19:55684464-55690811 [Contig_View]  SYT5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129990 [Gene_View]  chr19:55684464-55690811 [Contig_View]  SYT5 [Vega]
ICGC DataPortalENSG00000129990
TCGA cBioPortalSYT5
AceView (NCBI)SYT5
Genatlas (Paris)SYT5
WikiGenes6861
SOURCE (Princeton)SYT5
Genetics Home Reference (NIH)SYT5
Genomic and cartography
GoldenPath hg19 (UCSC)SYT5  -     chr19:55684464-55690811 -  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SYT5  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblSYT5 - 19q13.42 [CytoView hg19]  SYT5 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBISYT5 [Mapview hg19]  SYT5 [Mapview hg38]
OMIM600782   
Gene and transcription
Genbank (Entrez)AK125182 AK295337 AK313067 BC029962 BC033683
RefSeq transcript (Entrez)NM_001297774 NM_003180
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SYT5
Cluster EST : UnigeneHs.631566 [ NCBI ]
CGAP (NCI)Hs.631566
Alternative Splicing GalleryENSG00000129990
Gene ExpressionSYT5 [ NCBI-GEO ]   SYT5 [ EBI - ARRAY_EXPRESS ]   SYT5 [ SEEK ]   SYT5 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6861
GTEX Portal (Tissue expression)SYT5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00445   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00445  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00445
Splice isoforms : SwissVarO00445
PhosPhoSitePlusO00445
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Synaptotagmin   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT5
DMDM Disease mutations6861
Blocks (Seattle)SYT5
SuperfamilyO00445
Human Protein AtlasENSG00000129990
Peptide AtlasO00445
HPRD02870
IPIIPI00011727   IPI00922568   
Protein Interaction databases
DIP (DOE-UCLA)O00445
IntAct (EBI)O00445
FunCoupENSG00000129990
BioGRIDSYT5
STRING (EMBL)SYT5
ZODIACSYT5
Ontologies - Pathways
QuickGOO00445
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  cytosol  plasma membrane  vesicle fusion  synaptic transmission  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  cell junction  clathrin binding  synaptic vesicle membrane  dense core granule  neuron projection  neuronal cell body  protein heterodimerization activity  perinuclear region of cytoplasm  synaptic vesicle endocytosis  calcium ion-regulated exocytosis of neurotransmitter  recycling endosome membrane  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  cytosol  plasma membrane  vesicle fusion  synaptic transmission  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  cell junction  clathrin binding  synaptic vesicle membrane  dense core granule  neuron projection  neuronal cell body  protein heterodimerization activity  perinuclear region of cytoplasm  synaptic vesicle endocytosis  calcium ion-regulated exocytosis of neurotransmitter  recycling endosome membrane  
NDEx NetworkSYT5
Atlas of Cancer Signalling NetworkSYT5
Wikipedia pathwaysSYT5
Orthology - Evolution
OrthoDB6861
GeneTree (enSembl)ENSG00000129990
Phylogenetic Trees/Animal Genes : TreeFamSYT5
HOVERGENO00445
HOGENOMO00445
Homologs : HomoloGeneSYT5
Homology/Alignments : Family Browser (UCSC)SYT5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT5
dbVarSYT5
ClinVarSYT5
1000_GenomesSYT5 
Exome Variant ServerSYT5
ExAC (Exome Aggregation Consortium)SYT5 (select the gene name)
Genetic variants : HAPMAP6861
Genomic Variants (DGV)SYT5 [DGVbeta]
DECIPHER (Syndromes)19:55684464-55690811  ENSG00000129990
CONAN: Copy Number AnalysisSYT5 
Mutations
ICGC Data PortalSYT5 
TCGA Data PortalSYT5 
Broad Tumor PortalSYT5
OASIS PortalSYT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT5
DgiDB (Drug Gene Interaction Database)SYT5
DoCM (Curated mutations)SYT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT5 (select a term)
intoGenSYT5
Cancer3DSYT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600782   
Orphanet
MedgenSYT5
Genetic Testing Registry SYT5
NextProtO00445 [Medical]
TSGene6861
GENETestsSYT5
Huge Navigator SYT5 [HugePedia]
snp3D : Map Gene to Disease6861
BioCentury BCIQSYT5
ClinGenSYT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6861
Chemical/Pharm GKB GenePA36294
Clinical trialSYT5
Miscellaneous
canSAR (ICR)SYT5 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT5
EVEXSYT5
GoPubMedSYT5
iHOPSYT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:08 CET 2017

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