Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SYT5 (synaptotagmin V)

Identity

Other names-
HGNC (Hugo) SYT5
LocusID (NCBI) 6861
Location 19q13.42
Location_base_pair Starts at 55684469 and ends at 55691720 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SYT5   11513
Entrez_Gene (NCBI)SYT5  6861  synaptotagmin V
Cards
GeneCards (Weizmann)SYT5
Ensembl (Hinxton) [Gene_View]  chr19:55684469-55691720 [Contig_View]  SYT5 [Vega]
AceView (NCBI)SYT5
Genatlas (Paris)SYT5
SOURCE (Stanford)NM_003180
Genomic and cartography
GoldenPath (UCSC)SYT5  -  19q13.42   chr19:55684469-55691720 -  19q13.42   [Description]    (hg19-Feb_2009)
EnsemblSYT5 - 19q13.42 [CytoView]
Mapping of homologs : NCBISYT5 [Mapview]
OMIM600782   
Gene and transcription
Genbank (Entrez)AK125182 AK295337 AK313067 BC029962 BC033683
RefSeq transcript (SRS)NM_003180
RefSeq transcript (Entrez)NM_003180
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838498 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838498 NW_004078099
Consensus coding sequences : CCDS (NCBI)SYT5
Cluster EST : UnigeneHs.631566 [ SRS ] Hs.631566 [ NCBI ]
CGAP (NCI)Hs.631566
Alternative Splicing : Fast-db (Paris)GSHG0016125
Gene ExpressionSYT5 [ NCBI-GEO ]   SYT5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00445 (SRS) O00445 (Uniprot)
NextProtO00445
With graphics : InterProO00445
Splice isoforms : SwissVarO00445(Swissvar)
Domaine pattern : Prosite (SRS)C2 (PS50004)   
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (SRS)C2_Ca-dep    C2_Ca/lipid-bd_dom_CaLB    C2_dom    C2_membr_targeting    Synaptotagmin   
Domains : Interpro (EBI)C2_Ca-dep    C2_Ca/lipid-bd_dom_CaLB    C2_dom    C2_membr_targeting    Synaptotagmin   
Related proteins : CluSTrO00445
Domain families : Pfam (SRS)C2 (PF00168)   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
DMDM6861
Blocks (Seattle)O00445
HPRD02870
IPIIPI00011727   IPI00922568   
Protein Interaction databases
DIP (DOE-UCLA)O00445
IntAct (EBI)O00445
REACTOMESYT5
Protein Interaction Database6861
BioGRIDSYT5
InParanoidO00445
Interologous Interaction database O00445
IntegromeDBSYT5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SYT5
SNP (GeneSNP Utah)SYT5
SNP : HGBaseSYT5
Genetic variants : HAPMAPSYT5
Somatic Mutations in Cancer : COSMICSYT5 
CONAN: Copy Number AnalysisSYT5 
Mutations and Diseases : HGMDSYT5
OMIM600782   
GENETests600782   
Disease Genetic AssociationSYT5
Huge Navigator SYT5 [HugePedia]  SYT5 [HugeCancerGEM]
Genomic VariantsSYT5  SYT5 [DGVbeta]
ClinVarSYT5
snp3D : Map Gene to Disease6861
General knowledge
Homologs : HomoloGeneSYT5
Homology/Alignments : Family Browser (UCSC)SYT5
Phylogenetic Trees/Animal Genes : TreeFamSYT5
Chemical/Protein Interactions : CTD6861
Chemical/Pharm GKB GenePA36294
Clinical trialSYT5
Ontology : AmiGOtransporter activity  calcium-dependent phospholipid binding  energy reserve metabolic process  synaptic transmission  integral to membrane  syntaxin binding  cell junction  clathrin binding  synaptic vesicle membrane  dense core granule  neuron projection  neuronal cell body  small molecule metabolic process  metal ion binding  protein heterodimerization activity  perinuclear region of cytoplasm  regulation of insulin secretion  recycling endosome membrane  
Ontology : EGO-EBItransporter activity  calcium-dependent phospholipid binding  energy reserve metabolic process  synaptic transmission  integral to membrane  syntaxin binding  cell junction  clathrin binding  synaptic vesicle membrane  dense core granule  neuron projection  neuronal cell body  small molecule metabolic process  metal ion binding  protein heterodimerization activity  perinuclear region of cytoplasm  regulation of insulin secretion  recycling endosome membrane  
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGeneSYT5
iHOPSYT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:41:41 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.