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SYT6 (synaptotagmin 6)

Identity

Alias_namessynaptotagmin VI
Other aliassytVI
HGNC (Hugo) SYT6
LocusID (NCBI) 148281
Atlas_Id 50419
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 114089292 and ends at 114153850 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT6   18638
Cards
Entrez_Gene (NCBI)SYT6  148281  synaptotagmin 6
AliasessytVI
GeneCards (Weizmann)SYT6
Ensembl hg19 (Hinxton)ENSG00000134207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134207 [Gene_View]  chr1:114089292-114153850 [Contig_View]  SYT6 [Vega]
ICGC DataPortalENSG00000134207
TCGA cBioPortalSYT6
AceView (NCBI)SYT6
Genatlas (Paris)SYT6
WikiGenes148281
SOURCE (Princeton)SYT6
Genetics Home Reference (NIH)SYT6
Genomic and cartography
GoldenPath hg38 (UCSC)SYT6  -     chr1:114089292-114153850 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT6  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblSYT6 - 1p13.2 [CytoView hg19]  SYT6 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBISYT6 [Mapview hg19]  SYT6 [Mapview hg38]
OMIM607718   
Gene and transcription
Genbank (Entrez)AK056448 AK096744 BC044948 BX431128 DA306591
RefSeq transcript (Entrez)NM_001253772 NM_001270805 NM_205848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT6
Cluster EST : UnigeneHs.736999 [ NCBI ]
CGAP (NCI)Hs.736999
Alternative Splicing GalleryENSG00000134207
Gene ExpressionSYT6 [ NCBI-GEO ]   SYT6 [ EBI - ARRAY_EXPRESS ]   SYT6 [ SEEK ]   SYT6 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148281
GTEX Portal (Tissue expression)SYT6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7P8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7P8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7P8
Splice isoforms : SwissVarQ5T7P8
PhosPhoSitePlusQ5T7P8
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Synaptotagmin    SYT6   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT6
DMDM Disease mutations148281
Blocks (Seattle)SYT6
SuperfamilyQ5T7P8
Human Protein AtlasENSG00000134207
Peptide AtlasQ5T7P8
HPRD09654
IPIIPI00180851   IPI00903166   IPI00853053   IPI00852697   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7P8
IntAct (EBI)Q5T7P8
FunCoupENSG00000134207
BioGRIDSYT6
STRING (EMBL)SYT6
ZODIACSYT6
Ontologies - Pathways
QuickGOQ5T7P8
Ontology : AmiGOphosphatidylserine binding  calcium ion binding  calcium-dependent phospholipid binding  cytosol  plasma membrane  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  extrinsic component of membrane  syntaxin binding  cell junction  clathrin binding  synaptic vesicle membrane  protein homodimerization activity  calcium-dependent protein binding  calcium ion-regulated exocytosis of neurotransmitter  acrosomal vesicle exocytosis  perinuclear endoplasmic reticulum  
Ontology : EGO-EBIphosphatidylserine binding  calcium ion binding  calcium-dependent phospholipid binding  cytosol  plasma membrane  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  extrinsic component of membrane  syntaxin binding  cell junction  clathrin binding  synaptic vesicle membrane  protein homodimerization activity  calcium-dependent protein binding  calcium ion-regulated exocytosis of neurotransmitter  acrosomal vesicle exocytosis  perinuclear endoplasmic reticulum  
NDEx NetworkSYT6
Atlas of Cancer Signalling NetworkSYT6
Wikipedia pathwaysSYT6
Orthology - Evolution
OrthoDB148281
GeneTree (enSembl)ENSG00000134207
Phylogenetic Trees/Animal Genes : TreeFamSYT6
HOVERGENQ5T7P8
HOGENOMQ5T7P8
Homologs : HomoloGeneSYT6
Homology/Alignments : Family Browser (UCSC)SYT6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT6
dbVarSYT6
ClinVarSYT6
1000_GenomesSYT6 
Exome Variant ServerSYT6
ExAC (Exome Aggregation Consortium)SYT6 (select the gene name)
Genetic variants : HAPMAP148281
Genomic Variants (DGV)SYT6 [DGVbeta]
DECIPHERSYT6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT6 
Mutations
ICGC Data PortalSYT6 
TCGA Data PortalSYT6 
Broad Tumor PortalSYT6
OASIS PortalSYT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT6
DgiDB (Drug Gene Interaction Database)SYT6
DoCM (Curated mutations)SYT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT6 (select a term)
intoGenSYT6
Cancer3DSYT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607718   
Orphanet
MedgenSYT6
Genetic Testing Registry SYT6
NextProtQ5T7P8 [Medical]
TSGene148281
GENETestsSYT6
Target ValidationSYT6
Huge Navigator SYT6 [HugePedia]
snp3D : Map Gene to Disease148281
BioCentury BCIQSYT6
ClinGenSYT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148281
Chemical/Pharm GKB GenePA38614
Clinical trialSYT6
Miscellaneous
canSAR (ICR)SYT6 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT6
EVEXSYT6
GoPubMedSYT6
iHOPSYT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:09:07 CEST 2017

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