Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYT9 (synaptotagmin 9)

Identity

Alias_namessynaptotagmin IX
Other alias-
HGNC (Hugo) SYT9
LocusID (NCBI) 143425
Atlas_Id 56596
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 7251950 and ends at 7469045 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYT9   19265
Cards
Entrez_Gene (NCBI)SYT9  143425  synaptotagmin 9
Aliases
GeneCards (Weizmann)SYT9
Ensembl hg19 (Hinxton)ENSG00000170743 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170743 [Gene_View]  chr11:7251950-7469045 [Contig_View]  SYT9 [Vega]
ICGC DataPortalENSG00000170743
TCGA cBioPortalSYT9
AceView (NCBI)SYT9
Genatlas (Paris)SYT9
WikiGenes143425
SOURCE (Princeton)SYT9
Genetics Home Reference (NIH)SYT9
Genomic and cartography
GoldenPath hg38 (UCSC)SYT9  -     chr11:7251950-7469045 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYT9  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblSYT9 - 11p15.4 [CytoView hg19]  SYT9 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBISYT9 [Mapview hg19]  SYT9 [Mapview hg38]
OMIM613528   
Gene and transcription
Genbank (Entrez)AK055003 AK055929 AK127795 AK315013 AL137512
RefSeq transcript (Entrez)NM_175733
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYT9
Cluster EST : UnigeneHs.177193 [ NCBI ]
CGAP (NCI)Hs.177193
Alternative Splicing GalleryENSG00000170743
Gene ExpressionSYT9 [ NCBI-GEO ]   SYT9 [ EBI - ARRAY_EXPRESS ]   SYT9 [ SEEK ]   SYT9 [ MEM ]
Gene Expression Viewer (FireBrowse)SYT9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143425
GTEX Portal (Tissue expression)SYT9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SS6
Splice isoforms : SwissVarQ86SS6
PhosPhoSitePlusQ86SS6
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Synaptotagmin    SYT9   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)SYT9
DMDM Disease mutations143425
Blocks (Seattle)SYT9
SuperfamilyQ86SS6
Human Protein AtlasENSG00000170743
Peptide AtlasQ86SS6
HPRD11618
IPIIPI00386377   IPI00252845   IPI00979878   
Protein Interaction databases
DIP (DOE-UCLA)Q86SS6
IntAct (EBI)Q86SS6
FunCoupENSG00000170743
BioGRIDSYT9
STRING (EMBL)SYT9
ZODIACSYT9
Ontologies - Pathways
QuickGOQ86SS6
Ontology : AmiGOphosphatidylserine binding  calcium ion binding  calcium-dependent phospholipid binding  phosphatidylinositol-4,5-bisphosphate binding  plasma membrane  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  cell junction  clathrin binding  clathrin-coated vesicle membrane  secretory granule membrane  synaptic vesicle membrane  dense core granule  identical protein binding  positive regulation of calcium ion-dependent exocytosis  calcium ion-regulated exocytosis of neurotransmitter  regulation of insulin secretion  membrane organization  
Ontology : EGO-EBIphosphatidylserine binding  calcium ion binding  calcium-dependent phospholipid binding  phosphatidylinositol-4,5-bisphosphate binding  plasma membrane  plasma membrane  vesicle fusion  integral component of membrane  regulation of calcium ion-dependent exocytosis  syntaxin binding  cell junction  clathrin binding  clathrin-coated vesicle membrane  secretory granule membrane  synaptic vesicle membrane  dense core granule  identical protein binding  positive regulation of calcium ion-dependent exocytosis  calcium ion-regulated exocytosis of neurotransmitter  regulation of insulin secretion  membrane organization  
NDEx NetworkSYT9
Atlas of Cancer Signalling NetworkSYT9
Wikipedia pathwaysSYT9
Orthology - Evolution
OrthoDB143425
GeneTree (enSembl)ENSG00000170743
Phylogenetic Trees/Animal Genes : TreeFamSYT9
HOVERGENQ86SS6
HOGENOMQ86SS6
Homologs : HomoloGeneSYT9
Homology/Alignments : Family Browser (UCSC)SYT9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYT9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYT9
dbVarSYT9
ClinVarSYT9
1000_GenomesSYT9 
Exome Variant ServerSYT9
ExAC (Exome Aggregation Consortium)SYT9 (select the gene name)
Genetic variants : HAPMAP143425
Genomic Variants (DGV)SYT9 [DGVbeta]
DECIPHERSYT9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYT9 
Mutations
ICGC Data PortalSYT9 
TCGA Data PortalSYT9 
Broad Tumor PortalSYT9
OASIS PortalSYT9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYT9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYT9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYT9
DgiDB (Drug Gene Interaction Database)SYT9
DoCM (Curated mutations)SYT9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYT9 (select a term)
intoGenSYT9
Cancer3DSYT9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613528   
Orphanet
MedgenSYT9
Genetic Testing Registry SYT9
NextProtQ86SS6 [Medical]
TSGene143425
GENETestsSYT9
Target ValidationSYT9
Huge Navigator SYT9 [HugePedia]
snp3D : Map Gene to Disease143425
BioCentury BCIQSYT9
ClinGenSYT9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143425
Chemical/Pharm GKB GenePA134984583
Clinical trialSYT9
Miscellaneous
canSAR (ICR)SYT9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYT9
EVEXSYT9
GoPubMedSYT9
iHOPSYT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:23 CEST 2017

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