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SZRD1 (SUZ RNA binding domain containing 1)

Identity

Alias_namesC1orf144
chromosome 1 open reading frame 144
Alias_symbol (synonym)DKFZp566C0424
Other alias
HGNC (Hugo) SZRD1
LocusID (NCBI) 26099
Atlas_Id 74445
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16367030 and ends at 16398148 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SZRD1   30232
Cards
Entrez_Gene (NCBI)SZRD1  26099  SUZ RNA binding domain containing 1
AliasesC1orf144
GeneCards (Weizmann)SZRD1
Ensembl hg19 (Hinxton)ENSG00000055070 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000055070 [Gene_View]  chr1:16367030-16398148 [Contig_View]  SZRD1 [Vega]
ICGC DataPortalENSG00000055070
TCGA cBioPortalSZRD1
AceView (NCBI)SZRD1
Genatlas (Paris)SZRD1
WikiGenes26099
SOURCE (Princeton)SZRD1
Genetics Home Reference (NIH)SZRD1
Genomic and cartography
GoldenPath hg38 (UCSC)SZRD1  -     chr1:16367030-16398148 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SZRD1  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblSZRD1 - 1p36.13 [CytoView hg19]  SZRD1 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBISZRD1 [Mapview hg19]  SZRD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB097042 AB097043 AB097044 AB097045 AB097046
RefSeq transcript (Entrez)NM_001114600 NM_001271869
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SZRD1
Cluster EST : UnigeneHs.252967 [ NCBI ]
CGAP (NCI)Hs.252967
Alternative Splicing GalleryENSG00000055070
Gene ExpressionSZRD1 [ NCBI-GEO ]   SZRD1 [ EBI - ARRAY_EXPRESS ]   SZRD1 [ SEEK ]   SZRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SZRD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26099
GTEX Portal (Tissue expression)SZRD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z422   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z422  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z422
Splice isoforms : SwissVarQ7Z422
PhosPhoSitePlusQ7Z422
Domaine pattern : Prosite (Expaxy)SUZ (PS51673)   
Domains : Interpro (EBI)SUZ    SUZ-C   
Domain families : Pfam (Sanger)SUZ (PF12752)    SUZ-C (PF12901)   
Domain families : Pfam (NCBI)pfam12752    pfam12901   
Conserved Domain (NCBI)SZRD1
DMDM Disease mutations26099
Blocks (Seattle)SZRD1
SuperfamilyQ7Z422
Human Protein AtlasENSG00000055070
Peptide AtlasQ7Z422
HPRD13213
IPIIPI00470594   IPI00855947   IPI00855711   IPI00855815   IPI01010932   IPI00908578   IPI00385037   IPI00946126   IPI00945993   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z422
IntAct (EBI)Q7Z422
FunCoupENSG00000055070
BioGRIDSZRD1
STRING (EMBL)SZRD1
ZODIACSZRD1
Ontologies - Pathways
QuickGOQ7Z422
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSZRD1
Atlas of Cancer Signalling NetworkSZRD1
Wikipedia pathwaysSZRD1
Orthology - Evolution
OrthoDB26099
GeneTree (enSembl)ENSG00000055070
Phylogenetic Trees/Animal Genes : TreeFamSZRD1
HOVERGENQ7Z422
HOGENOMQ7Z422
Homologs : HomoloGeneSZRD1
Homology/Alignments : Family Browser (UCSC)SZRD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSZRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SZRD1
dbVarSZRD1
ClinVarSZRD1
1000_GenomesSZRD1 
Exome Variant ServerSZRD1
ExAC (Exome Aggregation Consortium)SZRD1 (select the gene name)
Genetic variants : HAPMAP26099
Genomic Variants (DGV)SZRD1 [DGVbeta]
DECIPHERSZRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSZRD1 
Mutations
ICGC Data PortalSZRD1 
TCGA Data PortalSZRD1 
Broad Tumor PortalSZRD1
OASIS PortalSZRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSZRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSZRD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SZRD1
DgiDB (Drug Gene Interaction Database)SZRD1
DoCM (Curated mutations)SZRD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SZRD1 (select a term)
intoGenSZRD1
Cancer3DSZRD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSZRD1
Genetic Testing Registry SZRD1
NextProtQ7Z422 [Medical]
TSGene26099
GENETestsSZRD1
Target ValidationSZRD1
Huge Navigator SZRD1 [HugePedia]
snp3D : Map Gene to Disease26099
BioCentury BCIQSZRD1
ClinGenSZRD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26099
Chemical/Pharm GKB GenePA142672461
Clinical trialSZRD1
Miscellaneous
canSAR (ICR)SZRD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSZRD1
EVEXSZRD1
GoPubMedSZRD1
iHOPSZRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:52 CEST 2017

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