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SZT2-AS1 (SZT2 antisense RNA 1)

Identity

Alias_namesSZT2 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SZT2-AS1
LocusID (NCBI) 100873952
Atlas_Id 80208
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43447776 and ends at 43448644 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SZT2-AS1   41225
Cards
Entrez_Gene (NCBI)SZT2-AS1  100873952  SZT2 antisense RNA 1
Aliases
GeneCards (Weizmann)SZT2-AS1
Ensembl hg19 (Hinxton)ENSG00000229372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229372 [Gene_View]  chr1:43447776-43448644 [Contig_View]  SZT2-AS1 [Vega]
ICGC DataPortalENSG00000229372
TCGA cBioPortalSZT2-AS1
AceView (NCBI)SZT2-AS1
Genatlas (Paris)SZT2-AS1
WikiGenes100873952
SOURCE (Princeton)SZT2-AS1
Genetics Home Reference (NIH)SZT2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SZT2-AS1  -     chr1:43447776-43448644 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SZT2-AS1  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblSZT2-AS1 - 1p34.2 [CytoView hg19]  SZT2-AS1 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBISZT2-AS1 [Mapview hg19]  SZT2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ029248 CA432588
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SZT2-AS1
Cluster EST : UnigeneHs.737454 [ NCBI ]
CGAP (NCI)Hs.737454
Alternative Splicing GalleryENSG00000229372
Gene ExpressionSZT2-AS1 [ NCBI-GEO ]   SZT2-AS1 [ EBI - ARRAY_EXPRESS ]   SZT2-AS1 [ SEEK ]   SZT2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SZT2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100873952
GTEX Portal (Tissue expression)SZT2-AS1
Human Protein AtlasENSG00000229372-SZT2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SZT2-AS1
DMDM Disease mutations100873952
Blocks (Seattle)SZT2-AS1
Human Protein Atlas [tissue]ENSG00000229372-SZT2-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000229372
BioGRIDSZT2-AS1
STRING (EMBL)SZT2-AS1
ZODIACSZT2-AS1
Ontologies - Pathways
Huge Navigator SZT2-AS1 [HugePedia]
snp3D : Map Gene to Disease100873952
BioCentury BCIQSZT2-AS1
ClinGenSZT2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873952
Clinical trialSZT2-AS1
Miscellaneous
canSAR (ICR)SZT2-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSZT2-AS1
EVEXSZT2-AS1
GoPubMedSZT2-AS1
iHOPSZT2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:03:16 CET 2017

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