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SZT2 (seizure threshold 2 homolog (mouse))

Identity

Alias_namesC1orf84
KIAA0467
chromosome 1 open reading frame 84
KIAA0467
Alias_symbol (synonym)FLJ10387
SZT2B
RP11-506B15.1
FLJ34502
SZT2A
Other aliasEIEE18
HGNC (Hugo) SZT2
LocusID (NCBI) 23334
Atlas_Id 74446
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43855556 and ends at 43919918 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCNB1IP1 (14q11.2) / SZT2 (1p34.2)JA040725 () / SZT2 (1p34.2)SZT2 (1p34.2) / ATP5L (11q23.3)
SZT2 (1p34.2) / EIF2B3 (1p34.1)SZT2 (1p34.2) / PLAGL1 (6q24.2)SZT2 (1p34.2) / RRAGC (1p34.3)
SZT2 (1p34.2) / SZT2 (1p34.2)TUT1 (11q12.3) / SZT2 (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SZT2   29040
Cards
Entrez_Gene (NCBI)SZT2  23334  seizure threshold 2 homolog (mouse)
AliasesC1orf84; EIEE18; KIAA0467; SZT2A; 
SZT2B
GeneCards (Weizmann)SZT2
Ensembl hg19 (Hinxton)ENSG00000198198 [Gene_View]  chr1:43855556-43919918 [Contig_View]  SZT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198198 [Gene_View]  chr1:43855556-43919918 [Contig_View]  SZT2 [Vega]
ICGC DataPortalENSG00000198198
TCGA cBioPortalSZT2
AceView (NCBI)SZT2
Genatlas (Paris)SZT2
WikiGenes23334
SOURCE (Princeton)SZT2
Genetics Home Reference (NIH)SZT2
Genomic and cartography
GoldenPath hg19 (UCSC)SZT2  -     chr1:43855556-43919918 +  1p34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SZT2  -     1p34.2   [Description]    (hg38-Dec_2013)
EnsemblSZT2 - 1p34.2 [CytoView hg19]  SZT2 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBISZT2 [Mapview hg19]  SZT2 [Mapview hg38]
OMIM615463   615476   
Gene and transcription
Genbank (Entrez)AB007936 AK001249 AK027078 AK091821 AK126972
RefSeq transcript (Entrez)NM_001012960 NM_001012961 NM_015284 NM_182518
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_029091 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)SZT2
Cluster EST : UnigeneHs.643560 [ NCBI ]
CGAP (NCI)Hs.643560
Alternative Splicing GalleryENSG00000198198
Gene ExpressionSZT2 [ NCBI-GEO ]   SZT2 [ EBI - ARRAY_EXPRESS ]   SZT2 [ SEEK ]   SZT2 [ MEM ]
Gene Expression Viewer (FireBrowse)SZT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23334
GTEX Portal (Tissue expression)SZT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T011   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T011  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T011
Splice isoforms : SwissVarQ5T011
PhosPhoSitePlusQ5T011
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SZT2
DMDM Disease mutations23334
Blocks (Seattle)SZT2
SuperfamilyQ5T011
Human Protein AtlasENSG00000198198
Peptide AtlasQ5T011
HPRD11085
IPIIPI00002221   IPI00896471   IPI00970827   IPI00168185   IPI00973277   
Protein Interaction databases
DIP (DOE-UCLA)Q5T011
IntAct (EBI)Q5T011
FunCoupENSG00000198198
BioGRIDSZT2
STRING (EMBL)SZT2
ZODIACSZT2
Ontologies - Pathways
QuickGOQ5T011
Ontology : AmiGOmolecular_function  protein binding  peroxisome  central nervous system development  post-embryonic development  corpus callosum morphogenesis  pigmentation  extracellular exosome  regulation of superoxide dismutase activity  
Ontology : EGO-EBImolecular_function  protein binding  peroxisome  central nervous system development  post-embryonic development  corpus callosum morphogenesis  pigmentation  extracellular exosome  regulation of superoxide dismutase activity  
NDEx NetworkSZT2
Atlas of Cancer Signalling NetworkSZT2
Wikipedia pathwaysSZT2
Orthology - Evolution
OrthoDB23334
GeneTree (enSembl)ENSG00000198198
Phylogenetic Trees/Animal Genes : TreeFamSZT2
HOVERGENQ5T011
HOGENOMQ5T011
Homologs : HomoloGeneSZT2
Homology/Alignments : Family Browser (UCSC)SZT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSZT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SZT2
dbVarSZT2
ClinVarSZT2
1000_GenomesSZT2 
Exome Variant ServerSZT2
ExAC (Exome Aggregation Consortium)SZT2 (select the gene name)
Genetic variants : HAPMAP23334
Genomic Variants (DGV)SZT2 [DGVbeta]
DECIPHER (Syndromes)1:43855556-43919918  ENSG00000198198
CONAN: Copy Number AnalysisSZT2 
Mutations
ICGC Data PortalSZT2 
TCGA Data PortalSZT2 
Broad Tumor PortalSZT2
OASIS PortalSZT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSZT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSZT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SZT2
DgiDB (Drug Gene Interaction Database)SZT2
DoCM (Curated mutations)SZT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SZT2 (select a term)
intoGenSZT2
Cancer3DSZT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615463    615476   
Orphanet22444   
MedgenSZT2
Genetic Testing Registry SZT2
NextProtQ5T011 [Medical]
TSGene23334
GENETestsSZT2
Huge Navigator SZT2 [HugePedia]
snp3D : Map Gene to Disease23334
BioCentury BCIQSZT2
ClinGenSZT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23334
Chemical/Pharm GKB GenePA142671628
Clinical trialSZT2
Miscellaneous
canSAR (ICR)SZT2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSZT2
EVEXSZT2
GoPubMedSZT2
iHOPSZT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:17 CET 2017

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