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TAAR1 (trace amine associated receptor 1)

Identity

Other aliasTA1
TAR1
TRAR1
HGNC (Hugo) TAAR1
LocusID (NCBI) 134864
Atlas_Id 57405
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132644898 and ends at 132646026 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAAR1   17734
Cards
Entrez_Gene (NCBI)TAAR1  134864  trace amine associated receptor 1
AliasesTA1; TAR1; TRAR1
GeneCards (Weizmann)TAAR1
Ensembl hg19 (Hinxton)ENSG00000146399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146399 [Gene_View]  ENSG00000146399 [Sequence]  chr6:132644898-132646026 [Contig_View]  TAAR1 [Vega]
ICGC DataPortalENSG00000146399
TCGA cBioPortalTAAR1
AceView (NCBI)TAAR1
Genatlas (Paris)TAAR1
WikiGenes134864
SOURCE (Princeton)TAAR1
Genetics Home Reference (NIH)TAAR1
Genomic and cartography
GoldenPath hg38 (UCSC)TAAR1  -     chr6:132644898-132646026 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAAR1  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblTAAR1 - 6q23.2 [CytoView hg19]  TAAR1 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBITAAR1 [Mapview hg19]  TAAR1 [Mapview hg38]
OMIM609333   
Gene and transcription
Genbank (Entrez)AY180374 BC101825 BC112194
RefSeq transcript (Entrez)NM_138327
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAAR1
Cluster EST : UnigeneHs.375030 [ NCBI ]
CGAP (NCI)Hs.375030
Alternative Splicing GalleryENSG00000146399
Gene ExpressionTAAR1 [ NCBI-GEO ]   TAAR1 [ EBI - ARRAY_EXPRESS ]   TAAR1 [ SEEK ]   TAAR1 [ MEM ]
Gene Expression Viewer (FireBrowse)TAAR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134864
GTEX Portal (Tissue expression)TAAR1
Human Protein AtlasENSG00000146399-TAAR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RJ0
Splice isoforms : SwissVarQ96RJ0
PhosPhoSitePlusQ96RJ0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    TAAR1    TAAR_fam   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)TAAR1
DMDM Disease mutations134864
Blocks (Seattle)TAAR1
SuperfamilyQ96RJ0
Human Protein Atlas [tissue]ENSG00000146399-TAAR1 [tissue]
Peptide AtlasQ96RJ0
IPIIPI00045329   
Protein Interaction databases
DIP (DOE-UCLA)Q96RJ0
IntAct (EBI)Q96RJ0
FunCoupENSG00000146399
BioGRIDTAAR1
STRING (EMBL)TAAR1
ZODIACTAAR1
Ontologies - Pathways
QuickGOQ96RJ0
Ontology : AmiGOtrace-amine receptor activity  G protein-coupled receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBItrace-amine receptor activity  G protein-coupled receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkTAAR1
Atlas of Cancer Signalling NetworkTAAR1
Wikipedia pathwaysTAAR1
Orthology - Evolution
OrthoDB134864
GeneTree (enSembl)ENSG00000146399
Phylogenetic Trees/Animal Genes : TreeFamTAAR1
HOVERGENQ96RJ0
HOGENOMQ96RJ0
Homologs : HomoloGeneTAAR1
Homology/Alignments : Family Browser (UCSC)TAAR1
Gene fusions - Rearrangements
Fusion : QuiverTAAR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAAR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAAR1
dbVarTAAR1
ClinVarTAAR1
1000_GenomesTAAR1 
Exome Variant ServerTAAR1
ExAC (Exome Aggregation Consortium)ENSG00000146399
GNOMAD BrowserENSG00000146399
Varsome BrowserTAAR1
Genetic variants : HAPMAP134864
Genomic Variants (DGV)TAAR1 [DGVbeta]
DECIPHERTAAR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAAR1 
Mutations
ICGC Data PortalTAAR1 
TCGA Data PortalTAAR1 
Broad Tumor PortalTAAR1
OASIS PortalTAAR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAAR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAAR1
BioMutasearch TAAR1
DgiDB (Drug Gene Interaction Database)TAAR1
DoCM (Curated mutations)TAAR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAAR1 (select a term)
intoGenTAAR1
Cancer3DTAAR1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609333   
Orphanet
DisGeNETTAAR1
MedgenTAAR1
Genetic Testing Registry TAAR1
NextProtQ96RJ0 [Medical]
TSGene134864
GENETestsTAAR1
Target ValidationTAAR1
Huge Navigator TAAR1 [HugePedia]
snp3D : Map Gene to Disease134864
BioCentury BCIQTAAR1
ClinGenTAAR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134864
Chemical/Pharm GKB GenePA134921784
Clinical trialTAAR1
Miscellaneous
canSAR (ICR)TAAR1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAAR1
EVEXTAAR1
GoPubMedTAAR1
iHOPTAAR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:43:26 CET 2018

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