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TAAR2 (trace amine associated receptor 2 (gene/pseudogene))

Identity

Alias_namesGPR58
G protein-coupled receptor 58
Other aliastaR-2
HGNC (Hugo) TAAR2
LocusID (NCBI) 9287
Atlas_Id 74449
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132617150 and ends at 132624275 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAAR2   4514
Cards
Entrez_Gene (NCBI)TAAR2  9287  trace amine associated receptor 2 (gene/pseudogene)
AliasesGPR58; taR-2
GeneCards (Weizmann)TAAR2
Ensembl hg19 (Hinxton)ENSG00000146378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146378 [Gene_View]  ENSG00000146378 [Sequence]  chr6:132617150-132624275 [Contig_View]  TAAR2 [Vega]
ICGC DataPortalENSG00000146378
TCGA cBioPortalTAAR2
AceView (NCBI)TAAR2
Genatlas (Paris)TAAR2
WikiGenes9287
SOURCE (Princeton)TAAR2
Genetics Home Reference (NIH)TAAR2
Genomic and cartography
GoldenPath hg38 (UCSC)TAAR2  -     chr6:132617150-132624275 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAAR2  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblTAAR2 - 6q23.2 [CytoView hg19]  TAAR2 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBITAAR2 [Mapview hg19]  TAAR2 [Mapview hg38]
OMIM604849   
Gene and transcription
Genbank (Entrez)AY702304 AY703480 BC067461 BC067462 BC067463
RefSeq transcript (Entrez)NM_001033080 NM_014626
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAAR2
Cluster EST : UnigeneHs.272382 [ NCBI ]
CGAP (NCI)Hs.272382
Alternative Splicing GalleryENSG00000146378
Gene ExpressionTAAR2 [ NCBI-GEO ]   TAAR2 [ EBI - ARRAY_EXPRESS ]   TAAR2 [ SEEK ]   TAAR2 [ MEM ]
Gene Expression Viewer (FireBrowse)TAAR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9287
GTEX Portal (Tissue expression)TAAR2
Human Protein AtlasENSG00000146378-TAAR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1P5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1P5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1P5
Splice isoforms : SwissVarQ9P1P5
PhosPhoSitePlusQ9P1P5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    TAAR_fam   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)TAAR2
DMDM Disease mutations9287
Blocks (Seattle)TAAR2
SuperfamilyQ9P1P5
Human Protein Atlas [tissue]ENSG00000146378-TAAR2 [tissue]
Peptide AtlasQ9P1P5
HPRD06887
IPIIPI00005616   IPI00651630   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1P5
IntAct (EBI)Q9P1P5
FunCoupENSG00000146378
BioGRIDTAAR2
STRING (EMBL)TAAR2
ZODIACTAAR2
Ontologies - Pathways
QuickGOQ9P1P5
Ontology : AmiGOtrace-amine receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBItrace-amine receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkTAAR2
Atlas of Cancer Signalling NetworkTAAR2
Wikipedia pathwaysTAAR2
Orthology - Evolution
OrthoDB9287
GeneTree (enSembl)ENSG00000146378
Phylogenetic Trees/Animal Genes : TreeFamTAAR2
HOVERGENQ9P1P5
HOGENOMQ9P1P5
Homologs : HomoloGeneTAAR2
Homology/Alignments : Family Browser (UCSC)TAAR2
Gene fusions - Rearrangements
Fusion : QuiverTAAR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAAR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAAR2
dbVarTAAR2
ClinVarTAAR2
1000_GenomesTAAR2 
Exome Variant ServerTAAR2
ExAC (Exome Aggregation Consortium)ENSG00000146378
GNOMAD BrowserENSG00000146378
Varsome BrowserTAAR2
Genetic variants : HAPMAP9287
Genomic Variants (DGV)TAAR2 [DGVbeta]
DECIPHERTAAR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAAR2 
Mutations
ICGC Data PortalTAAR2 
TCGA Data PortalTAAR2 
Broad Tumor PortalTAAR2
OASIS PortalTAAR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAAR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAAR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAAR2
DgiDB (Drug Gene Interaction Database)TAAR2
DoCM (Curated mutations)TAAR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAAR2 (select a term)
intoGenTAAR2
Cancer3DTAAR2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604849   
Orphanet
DisGeNETTAAR2
MedgenTAAR2
Genetic Testing Registry TAAR2
NextProtQ9P1P5 [Medical]
TSGene9287
GENETestsTAAR2
Target ValidationTAAR2
Huge Navigator TAAR2 [HugePedia]
snp3D : Map Gene to Disease9287
BioCentury BCIQTAAR2
ClinGenTAAR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9287
Chemical/Pharm GKB GenePA28903
Clinical trialTAAR2
Miscellaneous
canSAR (ICR)TAAR2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAAR2
EVEXTAAR2
GoPubMedTAAR2
iHOPTAAR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:55 CEST 2018

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