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TAAR3P (trace amine associated receptor 3, pseudogene)

Identity

Alias_namesGPR57
TAAR3
G protein-coupled receptor 57
trace amine associated receptor 3
trace amine associated receptor 3 (gene/pseudogene)
Other aliasGPR58
TAAR2
HGNC (Hugo) TAAR3P
LocusID (NCBI) 9288
Atlas_Id 78954
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132608225 and ends at 132609302 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAAR3P   4513
Cards
Entrez_Gene (NCBI)TAAR3P  9288  trace amine associated receptor 3, pseudogene
AliasesGPR57; GPR58; TAAR2; TAAR3
GeneCards (Weizmann)TAAR3P
Ensembl hg19 (Hinxton)ENSG00000179073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179073 [Gene_View]  ENSG00000179073 [Sequence]  chr6:132608225-132609302 [Contig_View]  TAAR3P [Vega]
ICGC DataPortalENSG00000179073
TCGA cBioPortalTAAR3P
AceView (NCBI)TAAR3P
Genatlas (Paris)TAAR3P
WikiGenes9288
SOURCE (Princeton)TAAR3P
Genetics Home Reference (NIH)TAAR3P
Genomic and cartography
GoldenPath hg38 (UCSC)TAAR3P  -     chr6:132608225-132609302 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAAR3P  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblTAAR3P - 6q23.2 [CytoView hg19]  TAAR3P - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBITAAR3P [Mapview hg19]  TAAR3P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC095548
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAAR3P
Cluster EST : UnigeneHs.730091 [ NCBI ]
CGAP (NCI)Hs.730091
Alternative Splicing GalleryENSG00000179073
Gene ExpressionTAAR3P [ NCBI-GEO ]   TAAR3P [ EBI - ARRAY_EXPRESS ]   TAAR3P [ SEEK ]   TAAR3P [ MEM ]
Gene Expression Viewer (FireBrowse)TAAR3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9288
GTEX Portal (Tissue expression)TAAR3P
Human Protein AtlasENSG00000179073-TAAR3P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1P4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1P4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1P4
Splice isoforms : SwissVarQ9P1P4
PhosPhoSitePlusQ9P1P4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    TAAR_fam   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)TAAR3P
DMDM Disease mutations9288
Blocks (Seattle)TAAR3P
SuperfamilyQ9P1P4
Human Protein Atlas [tissue]ENSG00000179073-TAAR3P [tissue]
Peptide AtlasQ9P1P4
IPIIPI00005619   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1P4
IntAct (EBI)Q9P1P4
FunCoupENSG00000179073
BioGRIDTAAR3P
STRING (EMBL)TAAR3P
ZODIACTAAR3P
Ontologies - Pathways
QuickGOQ9P1P4
Ontology : AmiGOtrace-amine receptor activity  trace-amine receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  
Ontology : EGO-EBItrace-amine receptor activity  trace-amine receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  
NDEx NetworkTAAR3P
Atlas of Cancer Signalling NetworkTAAR3P
Wikipedia pathwaysTAAR3P
Orthology - Evolution
OrthoDB9288
GeneTree (enSembl)ENSG00000179073
Phylogenetic Trees/Animal Genes : TreeFamTAAR3P
HOVERGENQ9P1P4
HOGENOMQ9P1P4
Homologs : HomoloGeneTAAR3P
Homology/Alignments : Family Browser (UCSC)TAAR3P
Gene fusions - Rearrangements
Fusion : QuiverTAAR3P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAAR3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAAR3P
dbVarTAAR3P
ClinVarTAAR3P
1000_GenomesTAAR3P 
Exome Variant ServerTAAR3P
ExAC (Exome Aggregation Consortium)ENSG00000179073
GNOMAD BrowserENSG00000179073
Varsome BrowserTAAR3P
Genetic variants : HAPMAP9288
Genomic Variants (DGV)TAAR3P [DGVbeta]
DECIPHERTAAR3P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAAR3P 
Mutations
ICGC Data PortalTAAR3P 
TCGA Data PortalTAAR3P 
Broad Tumor PortalTAAR3P
OASIS PortalTAAR3P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTAAR3P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAAR3P
DgiDB (Drug Gene Interaction Database)TAAR3P
DoCM (Curated mutations)TAAR3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAAR3P (select a term)
intoGenTAAR3P
Cancer3DTAAR3P(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTAAR3P
MedgenTAAR3P
Genetic Testing Registry TAAR3P
NextProtQ9P1P4 [Medical]
TSGene9288
GENETestsTAAR3P
Target ValidationTAAR3P
Huge Navigator TAAR3P [HugePedia]
snp3D : Map Gene to Disease9288
BioCentury BCIQTAAR3P
ClinGenTAAR3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9288
Chemical/Pharm GKB GenePA28902
Clinical trialTAAR3P
Miscellaneous
canSAR (ICR)TAAR3P (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAAR3P
EVEXTAAR3P
GoPubMedTAAR3P
iHOPTAAR3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:55 CEST 2018

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