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TAAR5 (trace amine associated receptor 5)

Identity

Alias_symbol (synonym)PNR
Other alias
HGNC (Hugo) TAAR5
LocusID (NCBI) 9038
Atlas_Id 74451
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132588592 and ends at 132589738 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAAR5   30236
Cards
Entrez_Gene (NCBI)TAAR5  9038  trace amine associated receptor 5
AliasesPNR
GeneCards (Weizmann)TAAR5
Ensembl hg19 (Hinxton)ENSG00000135569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135569 [Gene_View]  ENSG00000135569 [Sequence]  chr6:132588592-132589738 [Contig_View]  TAAR5 [Vega]
ICGC DataPortalENSG00000135569
TCGA cBioPortalTAAR5
AceView (NCBI)TAAR5
Genatlas (Paris)TAAR5
WikiGenes9038
SOURCE (Princeton)TAAR5
Genetics Home Reference (NIH)TAAR5
Genomic and cartography
GoldenPath hg38 (UCSC)TAAR5  -     chr6:132588592-132589738 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAAR5  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblTAAR5 - 6q23.2 [CytoView hg19]  TAAR5 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBITAAR5 [Mapview hg19]  TAAR5 [Mapview hg38]
OMIM607405   
Gene and transcription
Genbank (Entrez)AF021818 BC069171 BC095541 BC112209 BC112211
RefSeq transcript (Entrez)NM_003967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAAR5
Cluster EST : UnigeneHs.248198 [ NCBI ]
CGAP (NCI)Hs.248198
Alternative Splicing GalleryENSG00000135569
Gene ExpressionTAAR5 [ NCBI-GEO ]   TAAR5 [ EBI - ARRAY_EXPRESS ]   TAAR5 [ SEEK ]   TAAR5 [ MEM ]
Gene Expression Viewer (FireBrowse)TAAR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9038
GTEX Portal (Tissue expression)TAAR5
Human Protein AtlasENSG00000135569-TAAR5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14804   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14804  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14804
Splice isoforms : SwissVarO14804
PhosPhoSitePlusO14804
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    TAAR_fam   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)TAAR5
DMDM Disease mutations9038
Blocks (Seattle)TAAR5
SuperfamilyO14804
Human Protein Atlas [tissue]ENSG00000135569-TAAR5 [tissue]
Peptide AtlasO14804
HPRD08459
IPIIPI00022579   
Protein Interaction databases
DIP (DOE-UCLA)O14804
IntAct (EBI)O14804
FunCoupENSG00000135569
BioGRIDTAAR5
STRING (EMBL)TAAR5
ZODIACTAAR5
Ontologies - Pathways
QuickGOO14804
Ontology : AmiGOG-protein coupled receptor activity  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  trimethylamine receptor activity  
Ontology : EGO-EBIG-protein coupled receptor activity  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  trimethylamine receptor activity  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkTAAR5
Atlas of Cancer Signalling NetworkTAAR5
Wikipedia pathwaysTAAR5
Orthology - Evolution
OrthoDB9038
GeneTree (enSembl)ENSG00000135569
Phylogenetic Trees/Animal Genes : TreeFamTAAR5
HOVERGENO14804
HOGENOMO14804
Homologs : HomoloGeneTAAR5
Homology/Alignments : Family Browser (UCSC)TAAR5
Gene fusions - Rearrangements
Fusion : QuiverTAAR5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAAR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAAR5
dbVarTAAR5
ClinVarTAAR5
1000_GenomesTAAR5 
Exome Variant ServerTAAR5
ExAC (Exome Aggregation Consortium)ENSG00000135569
GNOMAD BrowserENSG00000135569
Varsome BrowserTAAR5
Genetic variants : HAPMAP9038
Genomic Variants (DGV)TAAR5 [DGVbeta]
DECIPHERTAAR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAAR5 
Mutations
ICGC Data PortalTAAR5 
TCGA Data PortalTAAR5 
Broad Tumor PortalTAAR5
OASIS PortalTAAR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAAR5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAAR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAAR5
DgiDB (Drug Gene Interaction Database)TAAR5
DoCM (Curated mutations)TAAR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAAR5 (select a term)
intoGenTAAR5
Cancer3DTAAR5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607405   
Orphanet
DisGeNETTAAR5
MedgenTAAR5
Genetic Testing Registry TAAR5
NextProtO14804 [Medical]
TSGene9038
GENETestsTAAR5
Target ValidationTAAR5
Huge Navigator TAAR5 [HugePedia]
snp3D : Map Gene to Disease9038
BioCentury BCIQTAAR5
ClinGenTAAR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9038
Chemical/Pharm GKB GenePA142670843
Clinical trialTAAR5
Miscellaneous
canSAR (ICR)TAAR5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAAR5
EVEXTAAR5
GoPubMedTAAR5
iHOPTAAR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:55 CEST 2018

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