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TAAR6 (trace amine associated receptor 6)

Identity

Alias_namesTRAR4
trace amine receptor 4
Alias_symbol (synonym)TA4
Other aliasTAR4
TAR6
taR-4
taR-6
HGNC (Hugo) TAAR6
LocusID (NCBI) 319100
Atlas_Id 74452
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132570322 and ends at 132571359 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAAR6   20978
Cards
Entrez_Gene (NCBI)TAAR6  319100  trace amine associated receptor 6
AliasesTA4; TAR4; TAR6; TRAR4; 
taR-4; taR-6
GeneCards (Weizmann)TAAR6
Ensembl hg19 (Hinxton)ENSG00000146383 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146383 [Gene_View]  ENSG00000146383 [Sequence]  chr6:132570322-132571359 [Contig_View]  TAAR6 [Vega]
ICGC DataPortalENSG00000146383
TCGA cBioPortalTAAR6
AceView (NCBI)TAAR6
Genatlas (Paris)TAAR6
WikiGenes319100
SOURCE (Princeton)TAAR6
Genetics Home Reference (NIH)TAAR6
Genomic and cartography
GoldenPath hg38 (UCSC)TAAR6  -     chr6:132570322-132571359 +  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAAR6  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblTAAR6 - 6q23.2 [CytoView hg19]  TAAR6 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBITAAR6 [Mapview hg19]  TAAR6 [Mapview hg38]
OMIM608923   
Gene and transcription
Genbank (Entrez)AY183470 BC069157
RefSeq transcript (Entrez)NM_175067
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAAR6
Cluster EST : UnigeneHs.434196 [ NCBI ]
CGAP (NCI)Hs.434196
Alternative Splicing GalleryENSG00000146383
Gene ExpressionTAAR6 [ NCBI-GEO ]   TAAR6 [ EBI - ARRAY_EXPRESS ]   TAAR6 [ SEEK ]   TAAR6 [ MEM ]
Gene Expression Viewer (FireBrowse)TAAR6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)319100
GTEX Portal (Tissue expression)TAAR6
Human Protein AtlasENSG00000146383-TAAR6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RI8
Splice isoforms : SwissVarQ96RI8
PhosPhoSitePlusQ96RI8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    TAAR_fam   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)TAAR6
DMDM Disease mutations319100
Blocks (Seattle)TAAR6
SuperfamilyQ96RI8
Human Protein Atlas [tissue]ENSG00000146383-TAAR6 [tissue]
Peptide AtlasQ96RI8
HPRD16404
IPIIPI00045309   IPI01009173   
Protein Interaction databases
DIP (DOE-UCLA)Q96RI8
IntAct (EBI)Q96RI8
FunCoupENSG00000146383
BioGRIDTAAR6
STRING (EMBL)TAAR6
ZODIACTAAR6
Ontologies - Pathways
QuickGOQ96RI8
Ontology : AmiGOtrace-amine receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBItrace-amine receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkTAAR6
Atlas of Cancer Signalling NetworkTAAR6
Wikipedia pathwaysTAAR6
Orthology - Evolution
OrthoDB319100
GeneTree (enSembl)ENSG00000146383
Phylogenetic Trees/Animal Genes : TreeFamTAAR6
HOVERGENQ96RI8
HOGENOMQ96RI8
Homologs : HomoloGeneTAAR6
Homology/Alignments : Family Browser (UCSC)TAAR6
Gene fusions - Rearrangements
Fusion : QuiverTAAR6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAAR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAAR6
dbVarTAAR6
ClinVarTAAR6
1000_GenomesTAAR6 
Exome Variant ServerTAAR6
ExAC (Exome Aggregation Consortium)ENSG00000146383
GNOMAD BrowserENSG00000146383
Varsome BrowserTAAR6
Genetic variants : HAPMAP319100
Genomic Variants (DGV)TAAR6 [DGVbeta]
DECIPHERTAAR6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAAR6 
Mutations
ICGC Data PortalTAAR6 
TCGA Data PortalTAAR6 
Broad Tumor PortalTAAR6
OASIS PortalTAAR6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAAR6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAAR6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAAR6
DgiDB (Drug Gene Interaction Database)TAAR6
DoCM (Curated mutations)TAAR6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAAR6 (select a term)
intoGenTAAR6
Cancer3DTAAR6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608923   
Orphanet
DisGeNETTAAR6
MedgenTAAR6
Genetic Testing Registry TAAR6
NextProtQ96RI8 [Medical]
TSGene319100
GENETestsTAAR6
Target ValidationTAAR6
Huge Navigator TAAR6 [HugePedia]
snp3D : Map Gene to Disease319100
BioCentury BCIQTAAR6
ClinGenTAAR6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD319100
Chemical/Pharm GKB GenePA134881141
Clinical trialTAAR6
Miscellaneous
canSAR (ICR)TAAR6 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAAR6
EVEXTAAR6
GoPubMedTAAR6
iHOPTAAR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:56 CEST 2018

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