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TAAR9 (trace amine associated receptor 9 (gene/pseudogene))

Identity

Alias_namesTRAR3
trace amine receptor 3
trace amine associated receptor 9
Alias_symbol (synonym)TA3
TAR3
Other aliasTAR9
HGNC (Hugo) TAAR9
LocusID (NCBI) 134860
Atlas_Id 74454
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132538288 and ends at 132539336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAAR9   20977
Cards
Entrez_Gene (NCBI)TAAR9  134860  trace amine associated receptor 9 (gene/pseudogene)
AliasesTA3; TAR3; TAR9; TRAR3
GeneCards (Weizmann)TAAR9
Ensembl hg19 (Hinxton)ENSG00000237110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237110 [Gene_View]  ENSG00000237110 [Sequence]  chr6:132538288-132539336 [Contig_View]  TAAR9 [Vega]
ICGC DataPortalENSG00000237110
TCGA cBioPortalTAAR9
AceView (NCBI)TAAR9
Genatlas (Paris)TAAR9
WikiGenes134860
SOURCE (Princeton)TAAR9
Genetics Home Reference (NIH)TAAR9
Genomic and cartography
GoldenPath hg38 (UCSC)TAAR9  -     chr6:132538288-132539336 +  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAAR9  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblTAAR9 - 6q23.2 [CytoView hg19]  TAAR9 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBITAAR9 [Mapview hg19]  TAAR9 [Mapview hg38]
OMIM608282   
Gene and transcription
Genbank (Entrez)AY183469 BC069083 BC160069
RefSeq transcript (Entrez)NM_175057
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAAR9
Cluster EST : UnigeneHs.434116 [ NCBI ]
CGAP (NCI)Hs.434116
Alternative Splicing GalleryENSG00000237110
Gene ExpressionTAAR9 [ NCBI-GEO ]   TAAR9 [ EBI - ARRAY_EXPRESS ]   TAAR9 [ SEEK ]   TAAR9 [ MEM ]
Gene Expression Viewer (FireBrowse)TAAR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134860
GTEX Portal (Tissue expression)TAAR9
Human Protein AtlasENSG00000237110-TAAR9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RI9
Splice isoforms : SwissVarQ96RI9
PhosPhoSitePlusQ96RI9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    TAAR_fam   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)TAAR9
DMDM Disease mutations134860
Blocks (Seattle)TAAR9
SuperfamilyQ96RI9
Human Protein Atlas [tissue]ENSG00000237110-TAAR9 [tissue]
Peptide AtlasQ96RI9
HPRD16308
IPIIPI00045310   
Protein Interaction databases
DIP (DOE-UCLA)Q96RI9
IntAct (EBI)Q96RI9
FunCoupENSG00000237110
BioGRIDTAAR9
STRING (EMBL)TAAR9
ZODIACTAAR9
Ontologies - Pathways
QuickGOQ96RI9
Ontology : AmiGOtrace-amine receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBItrace-amine receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkTAAR9
Atlas of Cancer Signalling NetworkTAAR9
Wikipedia pathwaysTAAR9
Orthology - Evolution
OrthoDB134860
GeneTree (enSembl)ENSG00000237110
Phylogenetic Trees/Animal Genes : TreeFamTAAR9
HOVERGENQ96RI9
HOGENOMQ96RI9
Homologs : HomoloGeneTAAR9
Homology/Alignments : Family Browser (UCSC)TAAR9
Gene fusions - Rearrangements
Fusion : QuiverTAAR9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAAR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAAR9
dbVarTAAR9
ClinVarTAAR9
1000_GenomesTAAR9 
Exome Variant ServerTAAR9
ExAC (Exome Aggregation Consortium)ENSG00000237110
GNOMAD BrowserENSG00000237110
Varsome BrowserTAAR9
Genetic variants : HAPMAP134860
Genomic Variants (DGV)TAAR9 [DGVbeta]
DECIPHERTAAR9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAAR9 
Mutations
ICGC Data PortalTAAR9 
TCGA Data PortalTAAR9 
Broad Tumor PortalTAAR9
OASIS PortalTAAR9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTAAR9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAAR9
DgiDB (Drug Gene Interaction Database)TAAR9
DoCM (Curated mutations)TAAR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAAR9 (select a term)
intoGenTAAR9
Cancer3DTAAR9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608282   
Orphanet
DisGeNETTAAR9
MedgenTAAR9
Genetic Testing Registry TAAR9
NextProtQ96RI9 [Medical]
TSGene134860
GENETestsTAAR9
Target ValidationTAAR9
Huge Navigator TAAR9 [HugePedia]
snp3D : Map Gene to Disease134860
BioCentury BCIQTAAR9
ClinGenTAAR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134860
Chemical/Pharm GKB GenePA134931528
Clinical trialTAAR9
Miscellaneous
canSAR (ICR)TAAR9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAAR9
EVEXTAAR9
GoPubMedTAAR9
iHOPTAAR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:56 CEST 2018

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