Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TACO1 (translational activator of cytochrome c oxidase I)

Identity

Alias_namesCCDC44
coiled-coil domain containing 44
translational activator of mitochondrially encoded cytochrome c oxidase I
Other alias
HGNC (Hugo) TACO1
LocusID (NCBI) 51204
Atlas_Id 74457
Location 17q23.3  [Link to chromosome band 17q23]
Location_base_pair Starts at 63600872 and ends at 63608365 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TACO1 (17q23.3) / TACO1 (17q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TACO1   24316
Cards
Entrez_Gene (NCBI)TACO1  51204  translational activator of cytochrome c oxidase I
AliasesCCDC44
GeneCards (Weizmann)TACO1
Ensembl hg19 (Hinxton)ENSG00000136463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136463 [Gene_View]  chr17:63600872-63608365 [Contig_View]  TACO1 [Vega]
ICGC DataPortalENSG00000136463
TCGA cBioPortalTACO1
AceView (NCBI)TACO1
Genatlas (Paris)TACO1
WikiGenes51204
SOURCE (Princeton)TACO1
Genetics Home Reference (NIH)TACO1
Genomic and cartography
GoldenPath hg38 (UCSC)TACO1  -     chr17:63600872-63608365 +  17q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TACO1  -     17q23.3   [Description]    (hg19-Feb_2009)
EnsemblTACO1 - 17q23.3 [CytoView hg19]  TACO1 - 17q23.3 [CytoView hg38]
Mapping of homologs : NCBITACO1 [Mapview hg19]  TACO1 [Mapview hg38]
OMIM220110   612958   
Gene and transcription
Genbank (Entrez)AK094052 AK315375 AL833861 BC005049 BC007744
RefSeq transcript (Entrez)NM_016360
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TACO1
Cluster EST : UnigeneHs.174134 [ NCBI ]
CGAP (NCI)Hs.174134
Alternative Splicing GalleryENSG00000136463
Gene ExpressionTACO1 [ NCBI-GEO ]   TACO1 [ EBI - ARRAY_EXPRESS ]   TACO1 [ SEEK ]   TACO1 [ MEM ]
Gene Expression Viewer (FireBrowse)TACO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51204
GTEX Portal (Tissue expression)TACO1
Human Protein AtlasENSG00000136463-TACO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSH4
Splice isoforms : SwissVarQ9BSH4
PhosPhoSitePlusQ9BSH4
Domains : Interpro (EBI)Integrase_Zn-bd_dom-like_N    Transcrip_reg_TACO1-like    Transcrip_reg_TACO1-like_dom2    Transcrip_reg_TACO1-like_dom3    YebC-like   
Domain families : Pfam (Sanger)Transcrip_reg (PF01709)   
Domain families : Pfam (NCBI)pfam01709   
Conserved Domain (NCBI)TACO1
DMDM Disease mutations51204
Blocks (Seattle)TACO1
SuperfamilyQ9BSH4
Human Protein Atlas [tissue]ENSG00000136463-TACO1 [tissue]
Peptide AtlasQ9BSH4
HPRD17421
IPIIPI00019903   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSH4
IntAct (EBI)Q9BSH4
FunCoupENSG00000136463
BioGRIDTACO1
STRING (EMBL)TACO1
ZODIACTACO1
Ontologies - Pathways
QuickGOQ9BSH4
Ontology : AmiGOprotein binding  nucleus  mitochondrion  mitochondrion  regulation of translation  
Ontology : EGO-EBIprotein binding  nucleus  mitochondrion  mitochondrion  regulation of translation  
NDEx NetworkTACO1
Atlas of Cancer Signalling NetworkTACO1
Wikipedia pathwaysTACO1
Orthology - Evolution
OrthoDB51204
GeneTree (enSembl)ENSG00000136463
Phylogenetic Trees/Animal Genes : TreeFamTACO1
HOVERGENQ9BSH4
HOGENOMQ9BSH4
Homologs : HomoloGeneTACO1
Homology/Alignments : Family Browser (UCSC)TACO1
Gene fusions - Rearrangements
Tumor Fusion PortalTACO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTACO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TACO1
dbVarTACO1
ClinVarTACO1
1000_GenomesTACO1 
Exome Variant ServerTACO1
ExAC (Exome Aggregation Consortium)ENSG00000136463
GNOMAD BrowserENSG00000136463
Genetic variants : HAPMAP51204
Genomic Variants (DGV)TACO1 [DGVbeta]
DECIPHERTACO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTACO1 
Mutations
ICGC Data PortalTACO1 
TCGA Data PortalTACO1 
Broad Tumor PortalTACO1
OASIS PortalTACO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTACO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTACO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TACO1
DgiDB (Drug Gene Interaction Database)TACO1
DoCM (Curated mutations)TACO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TACO1 (select a term)
intoGenTACO1
Cancer3DTACO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM220110    612958   
Orphanet19814   
DisGeNETTACO1
MedgenTACO1
Genetic Testing Registry TACO1
NextProtQ9BSH4 [Medical]
TSGene51204
GENETestsTACO1
Target ValidationTACO1
Huge Navigator TACO1 [HugePedia]
snp3D : Map Gene to Disease51204
BioCentury BCIQTACO1
ClinGenTACO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51204
Chemical/Pharm GKB GenePA165433031
Clinical trialTACO1
Miscellaneous
canSAR (ICR)TACO1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTACO1
EVEXTACO1
GoPubMedTACO1
iHOPTACO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:37:02 CET 2017

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