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TADA1 (transcriptional adaptor 1)

Identity

Alias_namesTADA1L
transcriptional adaptor 1 (HFI1 homolog, yeast)-like
transcriptional adaptor 1 (HFI1 homolog, yeast)
Alias_symbol (synonym)STAF42
ADA1
hADA1
HFI1
Other alias
HGNC (Hugo) TADA1
LocusID (NCBI) 117143
Atlas_Id 74459
Location 1q24.1  [Link to chromosome band 1q24]
Location_base_pair Starts at 166856512 and ends at 166876417 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TADA1 (1q24.1) / CADM3 (1q23.2)TADA1 (1q24.1) / EBF1 (5q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TADA1   30631
Cards
Entrez_Gene (NCBI)TADA1  117143  transcriptional adaptor 1
AliasesADA1; HFI1; STAF42; TADA1L; 
hADA1
GeneCards (Weizmann)TADA1
Ensembl hg19 (Hinxton)ENSG00000152382 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152382 [Gene_View]  chr1:166856512-166876417 [Contig_View]  TADA1 [Vega]
ICGC DataPortalENSG00000152382
TCGA cBioPortalTADA1
AceView (NCBI)TADA1
Genatlas (Paris)TADA1
WikiGenes117143
SOURCE (Princeton)TADA1
Genetics Home Reference (NIH)TADA1
Genomic and cartography
GoldenPath hg38 (UCSC)TADA1  -     chr1:166856512-166876417 -  1q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TADA1  -     1q24.1   [Description]    (hg19-Feb_2009)
EnsemblTADA1 - 1q24.1 [CytoView hg19]  TADA1 - 1q24.1 [CytoView hg38]
Mapping of homologs : NCBITADA1 [Mapview hg19]  TADA1 [Mapview hg38]
OMIM612763   
Gene and transcription
Genbank (Entrez)AK290964 AK291922 AK309250 AK310391 BC015401
RefSeq transcript (Entrez)NM_053053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TADA1
Cluster EST : UnigeneHs.435967 [ NCBI ]
CGAP (NCI)Hs.435967
Alternative Splicing GalleryENSG00000152382
Gene ExpressionTADA1 [ NCBI-GEO ]   TADA1 [ EBI - ARRAY_EXPRESS ]   TADA1 [ SEEK ]   TADA1 [ MEM ]
Gene Expression Viewer (FireBrowse)TADA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117143
GTEX Portal (Tissue expression)TADA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BN2
Splice isoforms : SwissVarQ96BN2
PhosPhoSitePlusQ96BN2
Domains : Interpro (EBI)Hfi1/Tada1   
Domain families : Pfam (Sanger)SAGA-Tad1 (PF12767)   
Domain families : Pfam (NCBI)pfam12767   
Conserved Domain (NCBI)TADA1
DMDM Disease mutations117143
Blocks (Seattle)TADA1
SuperfamilyQ96BN2
Human Protein AtlasENSG00000152382
Peptide AtlasQ96BN2
HPRD18114
IPIIPI00060046   
Protein Interaction databases
DIP (DOE-UCLA)Q96BN2
IntAct (EBI)Q96BN2
FunCoupENSG00000152382
BioGRIDTADA1
STRING (EMBL)TADA1
ZODIACTADA1
Ontologies - Pathways
QuickGOQ96BN2
Ontology : AmiGOSAGA complex  transcription coactivator activity  histone acetyltransferase activity  nucleus  nucleoplasm  cytosol  focal adhesion  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  STAGA complex  histone H3 acetylation  
Ontology : EGO-EBISAGA complex  transcription coactivator activity  histone acetyltransferase activity  nucleus  nucleoplasm  cytosol  focal adhesion  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  STAGA complex  histone H3 acetylation  
NDEx NetworkTADA1
Atlas of Cancer Signalling NetworkTADA1
Wikipedia pathwaysTADA1
Orthology - Evolution
OrthoDB117143
GeneTree (enSembl)ENSG00000152382
Phylogenetic Trees/Animal Genes : TreeFamTADA1
HOVERGENQ96BN2
HOGENOMQ96BN2
Homologs : HomoloGeneTADA1
Homology/Alignments : Family Browser (UCSC)TADA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTADA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TADA1
dbVarTADA1
ClinVarTADA1
1000_GenomesTADA1 
Exome Variant ServerTADA1
ExAC (Exome Aggregation Consortium)TADA1 (select the gene name)
Genetic variants : HAPMAP117143
Genomic Variants (DGV)TADA1 [DGVbeta]
DECIPHERTADA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTADA1 
Mutations
ICGC Data PortalTADA1 
TCGA Data PortalTADA1 
Broad Tumor PortalTADA1
OASIS PortalTADA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTADA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTADA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TADA1
DgiDB (Drug Gene Interaction Database)TADA1
DoCM (Curated mutations)TADA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TADA1 (select a term)
intoGenTADA1
Cancer3DTADA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612763   
Orphanet
MedgenTADA1
Genetic Testing Registry TADA1
NextProtQ96BN2 [Medical]
TSGene117143
GENETestsTADA1
Huge Navigator TADA1 [HugePedia]
snp3D : Map Gene to Disease117143
BioCentury BCIQTADA1
ClinGenTADA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117143
Chemical/Pharm GKB GenePA165752724
Clinical trialTADA1
Miscellaneous
canSAR (ICR)TADA1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTADA1
EVEXTADA1
GoPubMedTADA1
iHOPTADA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:57:16 CEST 2017

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