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TADA2B (transcriptional adaptor 2B)

Identity

Alias_symbol (synonym)MGC21874
Other aliasADA2(beta)
ADA2B
HGNC (Hugo) TADA2B
LocusID (NCBI) 93624
Atlas_Id 74460
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 7045156 and ends at 7059677 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACTG1 (17q25.3) / TADA2B (4p16.1)TADA2B (4p16.1) / DPP6 (7q36.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TADA2B   30781
Cards
Entrez_Gene (NCBI)TADA2B  93624  transcriptional adaptor 2B
AliasesADA2(beta); ADA2B
GeneCards (Weizmann)TADA2B
Ensembl hg19 (Hinxton)ENSG00000173011 [Gene_View]  chr4:7045156-7059677 [Contig_View]  TADA2B [Vega]
Ensembl hg38 (Hinxton)ENSG00000173011 [Gene_View]  chr4:7045156-7059677 [Contig_View]  TADA2B [Vega]
ICGC DataPortalENSG00000173011
TCGA cBioPortalTADA2B
AceView (NCBI)TADA2B
Genatlas (Paris)TADA2B
WikiGenes93624
SOURCE (Princeton)TADA2B
Genetics Home Reference (NIH)TADA2B
Genomic and cartography
GoldenPath hg19 (UCSC)TADA2B  -     chr4:7045156-7059677 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TADA2B  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblTADA2B - 4p16.1 [CytoView hg19]  TADA2B - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBITADA2B [Mapview hg19]  TADA2B [Mapview hg38]
OMIM608790   
Gene and transcription
Genbank (Entrez)AK026299 AK093974 AK096655 AK126966 BC013164
RefSeq transcript (Entrez)NM_152293
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929314
Consensus coding sequences : CCDS (NCBI)TADA2B
Cluster EST : UnigeneHs.518614 [ NCBI ]
CGAP (NCI)Hs.518614
Alternative Splicing GalleryENSG00000173011
Gene ExpressionTADA2B [ NCBI-GEO ]   TADA2B [ EBI - ARRAY_EXPRESS ]   TADA2B [ SEEK ]   TADA2B [ MEM ]
Gene Expression Viewer (FireBrowse)TADA2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93624
GTEX Portal (Tissue expression)TADA2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TJ2
Splice isoforms : SwissVarQ86TJ2
PhosPhoSitePlusQ86TJ2
Domaine pattern : Prosite (Expaxy)SANT (PS51293)    ZF_ZZ_1 (PS01357)    ZF_ZZ_2 (PS50135)   
Domains : Interpro (EBI)Homeodomain-like    SANT/Myb    SANT_dom    Znf_ZZ   
Domain families : Pfam (Sanger)Myb_DNA-binding (PF00249)    ZZ (PF00569)   
Domain families : Pfam (NCBI)pfam00249    pfam00569   
Domain families : Smart (EMBL)SANT (SM00717)  ZnF_ZZ (SM00291)  
Conserved Domain (NCBI)TADA2B
DMDM Disease mutations93624
Blocks (Seattle)TADA2B
SuperfamilyQ86TJ2
Human Protein AtlasENSG00000173011
Peptide AtlasQ86TJ2
IPIIPI00761105   IPI00879434   IPI00878171   IPI00967030   IPI00967919   
Protein Interaction databases
DIP (DOE-UCLA)Q86TJ2
IntAct (EBI)Q86TJ2
FunCoupENSG00000173011
BioGRIDTADA2B
STRING (EMBL)TADA2B
ZODIACTADA2B
Ontologies - Pathways
QuickGOQ86TJ2
Ontology : AmiGODNA binding  chromatin binding  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  STAGA complex  SAGA-type complex  
Ontology : EGO-EBIDNA binding  chromatin binding  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  STAGA complex  SAGA-type complex  
NDEx NetworkTADA2B
Atlas of Cancer Signalling NetworkTADA2B
Wikipedia pathwaysTADA2B
Orthology - Evolution
OrthoDB93624
GeneTree (enSembl)ENSG00000173011
Phylogenetic Trees/Animal Genes : TreeFamTADA2B
HOVERGENQ86TJ2
HOGENOMQ86TJ2
Homologs : HomoloGeneTADA2B
Homology/Alignments : Family Browser (UCSC)TADA2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTADA2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TADA2B
dbVarTADA2B
ClinVarTADA2B
1000_GenomesTADA2B 
Exome Variant ServerTADA2B
ExAC (Exome Aggregation Consortium)TADA2B (select the gene name)
Genetic variants : HAPMAP93624
Genomic Variants (DGV)TADA2B [DGVbeta]
DECIPHER (Syndromes)4:7045156-7059677  ENSG00000173011
CONAN: Copy Number AnalysisTADA2B 
Mutations
ICGC Data PortalTADA2B 
TCGA Data PortalTADA2B 
Broad Tumor PortalTADA2B
OASIS PortalTADA2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTADA2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTADA2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TADA2B
DgiDB (Drug Gene Interaction Database)TADA2B
DoCM (Curated mutations)TADA2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TADA2B (select a term)
intoGenTADA2B
Cancer3DTADA2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608790   
Orphanet
MedgenTADA2B
Genetic Testing Registry TADA2B
NextProtQ86TJ2 [Medical]
TSGene93624
GENETestsTADA2B
Huge Navigator TADA2B [HugePedia]
snp3D : Map Gene to Disease93624
BioCentury BCIQTADA2B
ClinGenTADA2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93624
Chemical/Pharm GKB GenePA165664556
Clinical trialTADA2B
Miscellaneous
canSAR (ICR)TADA2B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTADA2B
EVEXTADA2B
GoPubMedTADA2B
iHOPTADA2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:20 CET 2017

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