Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TAF10 (TATA-box binding protein associated factor 10)

Identity

Alias_namesTAF2H
TAF2A
TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30kD
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
Alias_symbol (synonym)TAFII30
Other alias
HGNC (Hugo) TAF10
LocusID (NCBI) 6881
Atlas_Id 42463
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6610817 and ends at 6612244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAF10 (11p15.4) / ZNF217 (20q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF10   11543
Cards
Entrez_Gene (NCBI)TAF10  6881  TATA-box binding protein associated factor 10
AliasesTAF2A; TAF2H; TAFII30
GeneCards (Weizmann)TAF10
Ensembl hg19 (Hinxton)ENSG00000166337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166337 [Gene_View]  chr11:6610817-6612244 [Contig_View]  TAF10 [Vega]
ICGC DataPortalENSG00000166337
TCGA cBioPortalTAF10
AceView (NCBI)TAF10
Genatlas (Paris)TAF10
WikiGenes6881
SOURCE (Princeton)TAF10
Genetics Home Reference (NIH)TAF10
Genomic and cartography
GoldenPath hg38 (UCSC)TAF10  -     chr11:6610817-6612244 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF10  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTAF10 - 11p15.4 [CytoView hg19]  TAF10 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITAF10 [Mapview hg19]  TAF10 [Mapview hg38]
OMIM600475   
Gene and transcription
Genbank (Entrez)AL833496 BC012088 BM990572 CR541943 U13991
RefSeq transcript (Entrez)NM_006284
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF10
Cluster EST : UnigeneHs.5158 [ NCBI ]
CGAP (NCI)Hs.5158
Alternative Splicing GalleryENSG00000166337
Gene ExpressionTAF10 [ NCBI-GEO ]   TAF10 [ EBI - ARRAY_EXPRESS ]   TAF10 [ SEEK ]   TAF10 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6881
GTEX Portal (Tissue expression)TAF10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12962   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12962  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12962
Splice isoforms : SwissVarQ12962
PhosPhoSitePlusQ12962
Domains : Interpro (EBI)TFIID_30kDa   
Domain families : Pfam (Sanger)TFIID_30kDa (PF03540)   
Domain families : Pfam (NCBI)pfam03540   
Conserved Domain (NCBI)TAF10
DMDM Disease mutations6881
Blocks (Seattle)TAF10
PDB (SRS)2F69    3M53    3M54    3M55    3M56    3M57    3M58    3M59    3M5A    4J7F    4J7I    4J83    4J8O    4WV4    5EG2   
PDB (PDBSum)2F69    3M53    3M54    3M55    3M56    3M57    3M58    3M59    3M5A    4J7F    4J7I    4J83    4J8O    4WV4    5EG2   
PDB (IMB)2F69    3M53    3M54    3M55    3M56    3M57    3M58    3M59    3M5A    4J7F    4J7I    4J83    4J8O    4WV4    5EG2   
PDB (RSDB)2F69    3M53    3M54    3M55    3M56    3M57    3M58    3M59    3M5A    4J7F    4J7I    4J83    4J8O    4WV4    5EG2   
Structural Biology KnowledgeBase2F69    3M53    3M54    3M55    3M56    3M57    3M58    3M59    3M5A    4J7F    4J7I    4J83    4J8O    4WV4    5EG2   
SCOP (Structural Classification of Proteins)2F69    3M53    3M54    3M55    3M56    3M57    3M58    3M59    3M5A    4J7F    4J7I    4J83    4J8O    4WV4    5EG2   
CATH (Classification of proteins structures)2F69    3M53    3M54    3M55    3M56    3M57    3M58    3M59    3M5A    4J7F    4J7I    4J83    4J8O    4WV4    5EG2   
SuperfamilyQ12962
Human Protein AtlasENSG00000166337
Peptide AtlasQ12962
HPRD15972
IPIIPI00030364   
Protein Interaction databases
DIP (DOE-UCLA)Q12962
IntAct (EBI)Q12962
FunCoupENSG00000166337
BioGRIDTAF10
STRING (EMBL)TAF10
ZODIACTAF10
Ontologies - Pathways
QuickGOQ12962
Ontology : AmiGOG1/S transition of mitotic cell cycle  PCAF complex  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  histone acetyltransferase activity  protein binding  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  cytoplasm  DNA-templated transcription, initiation  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  apoptotic process  histone deubiquitination  protein deubiquitination  enzyme binding  estrogen receptor binding  STAGA complex  transcription factor TFTC complex  multicellular organism growth  thiol-dependent ubiquitinyl hydrolase activity  cellular protein complex assembly  histone H3 acetylation  perinuclear region of cytoplasm  regulation of DNA binding  protein homooligomerization  RNA polymerase binding  hepatocyte differentiation  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  PCAF complex  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  histone acetyltransferase activity  protein binding  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  cytoplasm  DNA-templated transcription, initiation  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  apoptotic process  histone deubiquitination  protein deubiquitination  enzyme binding  estrogen receptor binding  STAGA complex  transcription factor TFTC complex  multicellular organism growth  thiol-dependent ubiquitinyl hydrolase activity  cellular protein complex assembly  histone H3 acetylation  perinuclear region of cytoplasm  regulation of DNA binding  protein homooligomerization  RNA polymerase binding  hepatocyte differentiation  regulation of signal transduction by p53 class mediator  
Pathways : KEGGBasal transcription factors    Herpes simplex infection   
NDEx NetworkTAF10
Atlas of Cancer Signalling NetworkTAF10
Wikipedia pathwaysTAF10
Orthology - Evolution
OrthoDB6881
GeneTree (enSembl)ENSG00000166337
Phylogenetic Trees/Animal Genes : TreeFamTAF10
HOVERGENQ12962
HOGENOMQ12962
Homologs : HomoloGeneTAF10
Homology/Alignments : Family Browser (UCSC)TAF10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF10
dbVarTAF10
ClinVarTAF10
1000_GenomesTAF10 
Exome Variant ServerTAF10
ExAC (Exome Aggregation Consortium)TAF10 (select the gene name)
Genetic variants : HAPMAP6881
Genomic Variants (DGV)TAF10 [DGVbeta]
DECIPHERTAF10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF10 
Mutations
ICGC Data PortalTAF10 
TCGA Data PortalTAF10 
Broad Tumor PortalTAF10
OASIS PortalTAF10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF10
DgiDB (Drug Gene Interaction Database)TAF10
DoCM (Curated mutations)TAF10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF10 (select a term)
intoGenTAF10
Cancer3DTAF10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600475   
Orphanet
MedgenTAF10
Genetic Testing Registry TAF10
NextProtQ12962 [Medical]
TSGene6881
GENETestsTAF10
Huge Navigator TAF10 [HugePedia]
snp3D : Map Gene to Disease6881
BioCentury BCIQTAF10
ClinGenTAF10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6881
Chemical/Pharm GKB GenePA36318
Clinical trialTAF10
Miscellaneous
canSAR (ICR)TAF10 (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF10
EVEXTAF10
GoPubMedTAF10
iHOPTAF10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:08 CEST 2017

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