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TAF11 (TATA-box binding protein associated factor 11)

Identity

Alias_namesTAF2I
TATA box binding protein (TBP)-associated factor, RNA polymerase II, I, 28kD
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
Alias_symbol (synonym)TAFII28
Other aliasMGC:15243
PRO2134
HGNC (Hugo) TAF11
LocusID (NCBI) 6882
Atlas_Id 74461
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 34877778 and ends at 34888071 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF11   11544
Cards
Entrez_Gene (NCBI)TAF11  6882  TATA-box binding protein associated factor 11
AliasesMGC:15243; PRO2134; TAF2I; TAFII28
GeneCards (Weizmann)TAF11
Ensembl hg19 (Hinxton)ENSG00000064995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064995 [Gene_View]  ENSG00000064995 [Sequence]  chr6:34877778-34888071 [Contig_View]  TAF11 [Vega]
ICGC DataPortalENSG00000064995
TCGA cBioPortalTAF11
AceView (NCBI)TAF11
Genatlas (Paris)TAF11
WikiGenes6882
SOURCE (Princeton)TAF11
Genetics Home Reference (NIH)TAF11
Genomic and cartography
GoldenPath hg38 (UCSC)TAF11  -     chr6:34877778-34888071 -  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF11  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblTAF11 - 6p21.31 [CytoView hg19]  TAF11 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBITAF11 [Mapview hg19]  TAF11 [Mapview hg38]
OMIM600772   
Gene and transcription
Genbank (Entrez)AF118094 AI755269 AK302226 AK313475 BC021972
RefSeq transcript (Entrez)NM_001270488 NM_005643
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF11
Cluster EST : UnigeneHs.112444 [ NCBI ]
CGAP (NCI)Hs.112444
Alternative Splicing GalleryENSG00000064995
Gene ExpressionTAF11 [ NCBI-GEO ]   TAF11 [ EBI - ARRAY_EXPRESS ]   TAF11 [ SEEK ]   TAF11 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6882
GTEX Portal (Tissue expression)TAF11
Human Protein AtlasENSG00000064995-TAF11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15544   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15544  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15544
Splice isoforms : SwissVarQ15544
PhosPhoSitePlusQ15544
Domains : Interpro (EBI)Histone-fold    TAFII28   
Domain families : Pfam (Sanger)TAFII28 (PF04719)   
Domain families : Pfam (NCBI)pfam04719   
Conserved Domain (NCBI)TAF11
DMDM Disease mutations6882
Blocks (Seattle)TAF11
PDB (SRS)1BH8    1BH9   
PDB (PDBSum)1BH8    1BH9   
PDB (IMB)1BH8    1BH9   
PDB (RSDB)1BH8    1BH9   
Structural Biology KnowledgeBase1BH8    1BH9   
SCOP (Structural Classification of Proteins)1BH8    1BH9   
CATH (Classification of proteins structures)1BH8    1BH9   
SuperfamilyQ15544
Human Protein Atlas [tissue]ENSG00000064995-TAF11 [tissue]
Peptide AtlasQ15544
HPRD15980
IPIIPI00018110   IPI00910537   
Protein Interaction databases
DIP (DOE-UCLA)Q15544
IntAct (EBI)Q15544
FunCoupENSG00000064995
BioGRIDTAF11
STRING (EMBL)TAF11
ZODIACTAF11
Ontologies - Pathways
QuickGOQ15544
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                        
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                        
Pathways : KEGGBasal transcription factors   
NDEx NetworkTAF11
Atlas of Cancer Signalling NetworkTAF11
Wikipedia pathwaysTAF11
Orthology - Evolution
OrthoDB6882
GeneTree (enSembl)ENSG00000064995
Phylogenetic Trees/Animal Genes : TreeFamTAF11
HOVERGENQ15544
HOGENOMQ15544
Homologs : HomoloGeneTAF11
Homology/Alignments : Family Browser (UCSC)TAF11
Gene fusions - Rearrangements
Fusion : QuiverTAF11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF11
dbVarTAF11
ClinVarTAF11
1000_GenomesTAF11 
Exome Variant ServerTAF11
ExAC (Exome Aggregation Consortium)ENSG00000064995
GNOMAD BrowserENSG00000064995
Varsome BrowserTAF11
Genetic variants : HAPMAP6882
Genomic Variants (DGV)TAF11 [DGVbeta]
DECIPHERTAF11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF11 
Mutations
ICGC Data PortalTAF11 
TCGA Data PortalTAF11 
Broad Tumor PortalTAF11
OASIS PortalTAF11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF11
DgiDB (Drug Gene Interaction Database)TAF11
DoCM (Curated mutations)TAF11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF11 (select a term)
intoGenTAF11
Cancer3DTAF11(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600772   
Orphanet
DisGeNETTAF11
MedgenTAF11
Genetic Testing Registry TAF11
NextProtQ15544 [Medical]
TSGene6882
GENETestsTAF11
Target ValidationTAF11
Huge Navigator TAF11 [HugePedia]
snp3D : Map Gene to Disease6882
BioCentury BCIQTAF11
ClinGenTAF11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6882
Chemical/Pharm GKB GenePA36319
Clinical trialTAF11
Miscellaneous
canSAR (ICR)TAF11 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF11
EVEXTAF11
GoPubMedTAF11
iHOPTAF11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:57 CEST 2018

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