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TAF12 (TATA-box binding protein associated factor 12)

Identity

Alias_namesTAF2J
TATA box binding protein (TBP)-associated factor, RNA polymerase II, J, 20kD
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
Alias_symbol (synonym)TAFII20
Other alias
HGNC (Hugo) TAF12
LocusID (NCBI) 6883
Atlas_Id 55306
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28603096 and ends at 28643092 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SDC3 (1p35.2) / TAF12 (1p35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF12   11545
Cards
Entrez_Gene (NCBI)TAF12  6883  TATA-box binding protein associated factor 12
AliasesTAF2J; TAFII20
GeneCards (Weizmann)TAF12
Ensembl hg19 (Hinxton)ENSG00000120656 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120656 [Gene_View]  chr1:28603096-28643092 [Contig_View]  TAF12 [Vega]
ICGC DataPortalENSG00000120656
TCGA cBioPortalTAF12
AceView (NCBI)TAF12
Genatlas (Paris)TAF12
WikiGenes6883
SOURCE (Princeton)TAF12
Genetics Home Reference (NIH)TAF12
Genomic and cartography
GoldenPath hg38 (UCSC)TAF12  -     chr1:28603096-28643092 -  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF12  -     1p35.3   [Description]    (hg19-Feb_2009)
EnsemblTAF12 - 1p35.3 [CytoView hg19]  TAF12 - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBITAF12 [Mapview hg19]  TAF12 [Mapview hg38]
OMIM600773   
Gene and transcription
Genbank (Entrez)AK310097 BC011986 BE787487 BM676557 BT007031
RefSeq transcript (Entrez)NM_001135218 NM_005644
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF12
Cluster EST : UnigeneHs.530251 [ NCBI ]
CGAP (NCI)Hs.530251
Alternative Splicing GalleryENSG00000120656
Gene ExpressionTAF12 [ NCBI-GEO ]   TAF12 [ EBI - ARRAY_EXPRESS ]   TAF12 [ SEEK ]   TAF12 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6883
GTEX Portal (Tissue expression)TAF12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16514   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16514  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16514
Splice isoforms : SwissVarQ16514
PhosPhoSitePlusQ16514
Domains : Interpro (EBI)Histone-fold    TFIID_TAF12   
Domain families : Pfam (Sanger)TFIID_20kDa (PF03847)   
Domain families : Pfam (NCBI)pfam03847   
Domain structure : Prodom (Prabi Lyon)PD012998 (PD012998)   
Conserved Domain (NCBI)TAF12
DMDM Disease mutations6883
Blocks (Seattle)TAF12
PDB (SRS)1H3O   
PDB (PDBSum)1H3O   
PDB (IMB)1H3O   
PDB (RSDB)1H3O   
Structural Biology KnowledgeBase1H3O   
SCOP (Structural Classification of Proteins)1H3O   
CATH (Classification of proteins structures)1H3O   
SuperfamilyQ16514
Human Protein AtlasENSG00000120656
Peptide AtlasQ16514
HPRD15981
IPIIPI00002806   IPI00759817   
Protein Interaction databases
DIP (DOE-UCLA)Q16514
IntAct (EBI)Q16514
FunCoupENSG00000120656
BioGRIDTAF12
STRING (EMBL)TAF12
ZODIACTAF12
Ontologies - Pathways
QuickGOQ16514
Ontology : AmiGOSAGA complex  RNA polymerase II activating transcription factor binding  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  histone acetyltransferase activity  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  DNA-templated transcription, initiation  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  transcription factor binding  TBP-class protein binding  STAGA complex  transcription factor TFTC complex  histone H3 acetylation  histone H3 acetylation  protein heterodimerization activity  positive regulation of sequence-specific DNA binding transcription factor activity  RNA polymerase II transcriptional preinitiation complex assembly  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBISAGA complex  RNA polymerase II activating transcription factor binding  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  histone acetyltransferase activity  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  DNA-templated transcription, initiation  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  transcription factor binding  TBP-class protein binding  STAGA complex  transcription factor TFTC complex  histone H3 acetylation  histone H3 acetylation  protein heterodimerization activity  positive regulation of sequence-specific DNA binding transcription factor activity  RNA polymerase II transcriptional preinitiation complex assembly  regulation of signal transduction by p53 class mediator  
Pathways : KEGGBasal transcription factors   
NDEx NetworkTAF12
Atlas of Cancer Signalling NetworkTAF12
Wikipedia pathwaysTAF12
Orthology - Evolution
OrthoDB6883
GeneTree (enSembl)ENSG00000120656
Phylogenetic Trees/Animal Genes : TreeFamTAF12
HOVERGENQ16514
HOGENOMQ16514
Homologs : HomoloGeneTAF12
Homology/Alignments : Family Browser (UCSC)TAF12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF12
dbVarTAF12
ClinVarTAF12
1000_GenomesTAF12 
Exome Variant ServerTAF12
ExAC (Exome Aggregation Consortium)TAF12 (select the gene name)
Genetic variants : HAPMAP6883
Genomic Variants (DGV)TAF12 [DGVbeta]
DECIPHERTAF12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF12 
Mutations
ICGC Data PortalTAF12 
TCGA Data PortalTAF12 
Broad Tumor PortalTAF12
OASIS PortalTAF12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF12
DgiDB (Drug Gene Interaction Database)TAF12
DoCM (Curated mutations)TAF12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF12 (select a term)
intoGenTAF12
Cancer3DTAF12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600773   
Orphanet
MedgenTAF12
Genetic Testing Registry TAF12
NextProtQ16514 [Medical]
TSGene6883
GENETestsTAF12
Target ValidationTAF12
Huge Navigator TAF12 [HugePedia]
snp3D : Map Gene to Disease6883
BioCentury BCIQTAF12
ClinGenTAF12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6883
Chemical/Pharm GKB GenePA36320
Clinical trialTAF12
Miscellaneous
canSAR (ICR)TAF12 (select the gene name)
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF12
EVEXTAF12
GoPubMedTAF12
iHOPTAF12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:16:20 CEST 2017

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