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TAF13 (TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa)

Identity

Alias_namesTAF2K
TATA box binding protein (TBP)-associated factor, RNA polymerase II, K, 18kD
TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
Alias_symbol (synonym)TAFII18
Other aliasTAF(II)18
TAFII-18
HGNC (Hugo) TAF13
LocusID (NCBI) 6884
Atlas_Id 74463
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109606998 and ends at 109618624 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NGFRAP1 () / TAF13 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF13   11546
Cards
Entrez_Gene (NCBI)TAF13  6884  TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
AliasesTAF(II)18; TAF2K; TAFII-18; TAFII18
GeneCards (Weizmann)TAF13
Ensembl hg19 (Hinxton) [Gene_View]  chr1:109606998-109618624 [Contig_View]  TAF13 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:109606998-109618624 [Contig_View]  TAF13 [Vega]
TCGA cBioPortalTAF13
AceView (NCBI)TAF13
Genatlas (Paris)TAF13
WikiGenes6884
SOURCE (Princeton)TAF13
Genetics Home Reference (NIH)TAF13
Genomic and cartography
GoldenPath hg19 (UCSC)TAF13  -     chr1:109606998-109618624 -  1p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TAF13  -     1p13.3   [Description]    (hg38-Dec_2013)
EnsemblTAF13 - 1p13.3 [CytoView hg19]  TAF13 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBITAF13 [Mapview hg19]  TAF13 [Mapview hg38]
OMIM600774   
Gene and transcription
Genbank (Entrez)AK312158 AU280379 AV713996 BC121180 BC121181
RefSeq transcript (Entrez)NM_005645
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TAF13
Cluster EST : UnigeneHs.632426 [ NCBI ]
CGAP (NCI)Hs.632426
Gene ExpressionTAF13 [ NCBI-GEO ]   TAF13 [ EBI - ARRAY_EXPRESS ]   TAF13 [ SEEK ]   TAF13 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6884
GTEX Portal (Tissue expression)TAF13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15543
Splice isoforms : SwissVarQ15543
PhosPhoSitePlusQ15543
Domains : Interpro (EBI)Histone-fold    TFIID-18   
Domain families : Pfam (Sanger)TFIID-18kDa (PF02269)   
Domain families : Pfam (NCBI)pfam02269   
Conserved Domain (NCBI)TAF13
DMDM Disease mutations6884
Blocks (Seattle)TAF13
PDB (SRS)1BH8    1BH9   
PDB (PDBSum)1BH8    1BH9   
PDB (IMB)1BH8    1BH9   
PDB (RSDB)1BH8    1BH9   
Structural Biology KnowledgeBase1BH8    1BH9   
SCOP (Structural Classification of Proteins)1BH8    1BH9   
CATH (Classification of proteins structures)1BH8    1BH9   
SuperfamilyQ15543
Peptide AtlasQ15543
IPIIPI00018108   
Protein Interaction databases
DIP (DOE-UCLA)Q15543
IntAct (EBI)Q15543
BioGRIDTAF13
STRING (EMBL)TAF13
ZODIACTAF13
Ontologies - Pathways
QuickGOQ15543
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  transcription cofactor activity  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  nucleolus  DNA-templated transcription, initiation  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  protein C-terminus binding  gene expression  viral process  protein heterodimerization activity  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  transcription cofactor activity  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  nucleolus  DNA-templated transcription, initiation  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  protein C-terminus binding  gene expression  viral process  protein heterodimerization activity  
Pathways : KEGGBasal transcription factors    Herpes simplex infection   
NDEx NetworkTAF13
Atlas of Cancer Signalling NetworkTAF13
Wikipedia pathwaysTAF13
Orthology - Evolution
OrthoDB6884
Phylogenetic Trees/Animal Genes : TreeFamTAF13
HOVERGENQ15543
HOGENOMQ15543
Homologs : HomoloGeneTAF13
Homology/Alignments : Family Browser (UCSC)TAF13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF13
dbVarTAF13
ClinVarTAF13
1000_GenomesTAF13 
Exome Variant ServerTAF13
ExAC (Exome Aggregation Consortium)TAF13 (select the gene name)
Genetic variants : HAPMAP6884
Genomic Variants (DGV)TAF13 [DGVbeta]
DECIPHER (Syndromes)1:109606998-109618624  
CONAN: Copy Number AnalysisTAF13 
Mutations
ICGC Data PortalTAF13 
TCGA Data PortalTAF13 
Broad Tumor PortalTAF13
OASIS PortalTAF13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF13
DgiDB (Drug Gene Interaction Database)TAF13
DoCM (Curated mutations)TAF13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF13 (select a term)
intoGenTAF13
Cancer3DTAF13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600774   
Orphanet
MedgenTAF13
Genetic Testing Registry TAF13
NextProtQ15543 [Medical]
TSGene6884
GENETestsTAF13
Huge Navigator TAF13 [HugePedia]
snp3D : Map Gene to Disease6884
BioCentury BCIQTAF13
ClinGenTAF13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6884
Chemical/Pharm GKB GenePA36321
Clinical trialTAF13
Miscellaneous
canSAR (ICR)TAF13 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF13
EVEXTAF13
GoPubMedTAF13
iHOPTAF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:20 CET 2017

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