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TAF13 (TATA-box binding protein associated factor 13)

Identity

Alias (NCBI)MRT60
TAF(II)18
TAF2K
TAFII-18
TAFII18
HGNC (Hugo) TAF13
HGNC Alias symbTAFII18
HGNC Previous nameTAF2K
HGNC Previous nameTATA box binding protein (TBP)-associated factor, RNA polymerase II, K, 18kD
 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
LocusID (NCBI) 6884
Atlas_Id 74463
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109064140 and ends at 109076003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NGFRAP1 () / TAF13 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAF13   11546
Cards
Entrez_Gene (NCBI)TAF13    TATA-box binding protein associated factor 13
AliasesMRT60; TAF(II)18; TAF2K; TAFII-18; 
TAFII18
GeneCards (Weizmann)TAF13
Ensembl hg19 (Hinxton)ENSG00000197780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197780 [Gene_View]  ENSG00000197780 [Sequence]  chr1:109064140-109076003 [Contig_View]  TAF13 [Vega]
ICGC DataPortalENSG00000197780
TCGA cBioPortalTAF13
AceView (NCBI)TAF13
Genatlas (Paris)TAF13
SOURCE (Princeton)TAF13
Genetics Home Reference (NIH)TAF13
Genomic and cartography
GoldenPath hg38 (UCSC)TAF13  -     chr1:109064140-109076003 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF13  -     1p13.3   [Description]    (hg19-Feb_2009)
GoldenPathTAF13 - 1p13.3 [CytoView hg19]  TAF13 - 1p13.3 [CytoView hg38]
ImmunoBaseENSG00000197780
Genome Data Viewer NCBITAF13 [Mapview hg19]  
OMIM600774   617432   
Gene and transcription
Genbank (Entrez)AK312158 AU280379 AV713996 BC121180 BC121181
RefSeq transcript (Entrez)NM_005645
Consensus coding sequences : CCDS (NCBI)TAF13
Gene ExpressionTAF13 [ NCBI-GEO ]   TAF13 [ EBI - ARRAY_EXPRESS ]   TAF13 [ SEEK ]   TAF13 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF13 [ Firebrowse - Broad ]
GenevisibleExpression of TAF13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6884
GTEX Portal (Tissue expression)TAF13
Human Protein AtlasENSG00000197780-TAF13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15543
PhosPhoSitePlusQ15543
Domains : Interpro (EBI)Histone-fold    TFIID_TAF13   
Domain families : Pfam (Sanger)TFIID-18kDa (PF02269)   
Domain families : Pfam (NCBI)pfam02269   
Conserved Domain (NCBI)TAF13
PDB (RSDB)1BH8    1BH9    6MZD    6MZL   
PDB Europe1BH8    1BH9    6MZD    6MZL   
PDB (PDBSum)1BH8    1BH9    6MZD    6MZL   
PDB (IMB)1BH8    1BH9    6MZD    6MZL   
Structural Biology KnowledgeBase1BH8    1BH9    6MZD    6MZL   
SCOP (Structural Classification of Proteins)1BH8    1BH9    6MZD    6MZL   
CATH (Classification of proteins structures)1BH8    1BH9    6MZD    6MZL   
SuperfamilyQ15543
AlphaFold pdb e-kbQ15543   
Human Protein Atlas [tissue]ENSG00000197780-TAF13 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q15543
IntAct (EBI)Q15543
BioGRIDTAF13
STRING (EMBL)TAF13
ZODIACTAF13
Ontologies - Pathways
QuickGOQ15543
Ontology : AmiGODNA binding  protein binding  nucleoplasm  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  transcription factor TFIID complex  nucleolus  DNA-templated transcription, initiation  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  protein C-terminus binding  RNA polymerase II general transcription initiation factor activity  TBP-class protein binding  snRNA transcription by RNA polymerase II  protein heterodimerization activity  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  transcription factor TFIID complex  nucleolus  DNA-templated transcription, initiation  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  protein C-terminus binding  RNA polymerase II general transcription initiation factor activity  TBP-class protein binding  snRNA transcription by RNA polymerase II  protein heterodimerization activity  regulation of signal transduction by p53 class mediator  
Pathways : KEGGBasal transcription factors   
NDEx NetworkTAF13
Atlas of Cancer Signalling NetworkTAF13
Wikipedia pathwaysTAF13
Orthology - Evolution
OrthoDB6884
GeneTree (enSembl)ENSG00000197780
Phylogenetic Trees/Animal Genes : TreeFamTAF13
Homologs : HomoloGeneTAF13
Homology/Alignments : Family Browser (UCSC)TAF13
Gene fusions - Rearrangements
Fusion : QuiverTAF13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF13
dbVarTAF13
ClinVarTAF13
MonarchTAF13
1000_GenomesTAF13 
Exome Variant ServerTAF13
GNOMAD BrowserENSG00000197780
Varsome BrowserTAF13
ACMGTAF13 variants
VarityQ15543
Genomic Variants (DGV)TAF13 [DGVbeta]
DECIPHERTAF13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF13 
Mutations
ICGC Data PortalTAF13 
TCGA Data PortalTAF13 
Broad Tumor PortalTAF13
OASIS PortalTAF13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAF13
Mutations and Diseases : HGMDTAF13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAF13
DgiDB (Drug Gene Interaction Database)TAF13
DoCM (Curated mutations)TAF13
CIViC (Clinical Interpretations of Variants in Cancer)TAF13
Cancer3DTAF13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600774    617432   
Orphanet
DisGeNETTAF13
MedgenTAF13
Genetic Testing Registry TAF13
NextProtQ15543 [Medical]
GENETestsTAF13
Target ValidationTAF13
Huge Navigator TAF13 [HugePedia]
ClinGenTAF13
Clinical trials, drugs, therapy
MyCancerGenomeTAF13
Protein Interactions : CTDTAF13
Pharm GKB GenePA36321
PharosQ15543
Clinical trialTAF13
Miscellaneous
canSAR (ICR)TAF13
HarmonizomeTAF13
DataMed IndexTAF13
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:46 CEST 2021

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