Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TAF1A-AS1 (TAF1A antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) TAF1A-AS1
LocusID (NCBI) 100506161
Atlas_Id 74465
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 222589920 and ends at 222592633 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF1A-AS1   40573
Cards
Entrez_Gene (NCBI)TAF1A-AS1  100506161  TAF1A antisense RNA 1
Aliases
GeneCards (Weizmann)TAF1A-AS1
Ensembl hg19 (Hinxton)ENSG00000225265 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225265 [Gene_View]  chr1:222589920-222592633 [Contig_View]  TAF1A-AS1 [Vega]
ICGC DataPortalENSG00000225265
TCGA cBioPortalTAF1A-AS1
AceView (NCBI)TAF1A-AS1
Genatlas (Paris)TAF1A-AS1
WikiGenes100506161
SOURCE (Princeton)TAF1A-AS1
Genetics Home Reference (NIH)TAF1A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TAF1A-AS1  -     chr1:222589920-222592633 +  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF1A-AS1  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblTAF1A-AS1 - 1q41 [CytoView hg19]  TAF1A-AS1 - 1q41 [CytoView hg38]
Mapping of homologs : NCBITAF1A-AS1 [Mapview hg19]  TAF1A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA202557 HY020214
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF1A-AS1
Cluster EST : UnigeneHs.553851 [ NCBI ]
CGAP (NCI)Hs.553851
Alternative Splicing GalleryENSG00000225265
Gene ExpressionTAF1A-AS1 [ NCBI-GEO ]   TAF1A-AS1 [ EBI - ARRAY_EXPRESS ]   TAF1A-AS1 [ SEEK ]   TAF1A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF1A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506161
GTEX Portal (Tissue expression)TAF1A-AS1
Human Protein AtlasENSG00000225265-TAF1A-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TAF1A-AS1
DMDM Disease mutations100506161
Blocks (Seattle)TAF1A-AS1
Human Protein Atlas [tissue]ENSG00000225265-TAF1A-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000225265
BioGRIDTAF1A-AS1
STRING (EMBL)TAF1A-AS1
ZODIACTAF1A-AS1
Ontologies - Pathways
Huge Navigator TAF1A-AS1 [HugePedia]
snp3D : Map Gene to Disease100506161
BioCentury BCIQTAF1A-AS1
ClinGenTAF1A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506161
Clinical trialTAF1A-AS1
Miscellaneous
canSAR (ICR)TAF1A-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF1A-AS1
EVEXTAF1A-AS1
GoPubMedTAF1A-AS1
iHOPTAF1A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:03:17 CET 2017

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