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TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A)

Identity

Alias (NCBI)MGC:17061
RAFI48
SL1
TAFI48
HGNC (Hugo) TAF1A
HGNC Alias symbTAFI48
SL1
HGNC Previous nameTATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kD
 TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa
LocusID (NCBI) 9015
Atlas_Id 74464
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 222557902 and ends at 222589933 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TAF1A (1q41) / SLC12A7 (5p15.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAF1A   11532
Cards
Entrez_Gene (NCBI)TAF1A    TATA-box binding protein associated factor, RNA polymerase I subunit A
AliasesMGC:17061; RAFI48; SL1; TAFI48
GeneCards (Weizmann)TAF1A
Ensembl hg19 (Hinxton)ENSG00000143498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143498 [Gene_View]  ENSG00000143498 [Sequence]  chr1:222557902-222589933 [Contig_View]  TAF1A [Vega]
ICGC DataPortalENSG00000143498
TCGA cBioPortalTAF1A
AceView (NCBI)TAF1A
Genatlas (Paris)TAF1A
SOURCE (Princeton)TAF1A
Genetics Home Reference (NIH)TAF1A
Genomic and cartography
GoldenPath hg38 (UCSC)TAF1A  -     chr1:222557902-222589933 -  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF1A  -     1q41   [Description]    (hg19-Feb_2009)
GoldenPathTAF1A - 1q41 [CytoView hg19]  TAF1A - 1q41 [CytoView hg38]
ImmunoBaseENSG00000143498
Genome Data Viewer NCBITAF1A [Mapview hg19]  
OMIM604903   
Gene and transcription
Genbank (Entrez)AK001054 AK290970 AK299536 AK307882 AK315740
RefSeq transcript (Entrez)NM_001201536 NM_005681 NM_139352
Consensus coding sequences : CCDS (NCBI)TAF1A
Gene ExpressionTAF1A [ NCBI-GEO ]   TAF1A [ EBI - ARRAY_EXPRESS ]   TAF1A [ SEEK ]   TAF1A [ MEM ]
Gene Expression Viewer (FireBrowse)TAF1A [ Firebrowse - Broad ]
GenevisibleExpression of TAF1A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9015
GTEX Portal (Tissue expression)TAF1A
Human Protein AtlasENSG00000143498-TAF1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15573   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15573  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15573
PhosPhoSitePlusQ15573
Domains : Interpro (EBI)RNA_pol_I_TAF1A/TAFI48    TAF1A-like   
Domain families : Pfam (Sanger)TAF1_subA (PF14929)   
Domain families : Pfam (NCBI)pfam14929   
Conserved Domain (NCBI)TAF1A
SuperfamilyQ15573
AlphaFold pdb e-kbQ15573   
Human Protein Atlas [tissue]ENSG00000143498-TAF1A [tissue]
HPRD05362
Protein Interaction databases
DIP (DOE-UCLA)Q15573
IntAct (EBI)Q15573
BioGRIDTAF1A
STRING (EMBL)TAF1A
ZODIACTAF1A
Ontologies - Pathways
QuickGOQ15573
Ontology : AmiGORNA polymerase I transcription regulator complex  DNA binding  protein binding  nucleoplasm  nucleoplasm  transcription by RNA polymerase I  transcription initiation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription by RNA polymerase II  microtubule cytoskeleton  positive regulation of gene expression, epigenetic  
Ontology : EGO-EBIRNA polymerase I transcription regulator complex  DNA binding  protein binding  nucleoplasm  nucleoplasm  transcription by RNA polymerase I  transcription initiation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription by RNA polymerase II  microtubule cytoskeleton  positive regulation of gene expression, epigenetic  
NDEx NetworkTAF1A
Atlas of Cancer Signalling NetworkTAF1A
Wikipedia pathwaysTAF1A
Orthology - Evolution
OrthoDB9015
GeneTree (enSembl)ENSG00000143498
Phylogenetic Trees/Animal Genes : TreeFamTAF1A
Homologs : HomoloGeneTAF1A
Homology/Alignments : Family Browser (UCSC)TAF1A
Gene fusions - Rearrangements
Fusion : QuiverTAF1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF1A
dbVarTAF1A
ClinVarTAF1A
MonarchTAF1A
1000_GenomesTAF1A 
Exome Variant ServerTAF1A
GNOMAD BrowserENSG00000143498
Varsome BrowserTAF1A
ACMGTAF1A variants
VarityQ15573
Genomic Variants (DGV)TAF1A [DGVbeta]
DECIPHERTAF1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF1A 
Mutations
ICGC Data PortalTAF1A 
TCGA Data PortalTAF1A 
Broad Tumor PortalTAF1A
OASIS PortalTAF1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF1A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAF1A
Mutations and Diseases : HGMDTAF1A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAF1A
DgiDB (Drug Gene Interaction Database)TAF1A
DoCM (Curated mutations)TAF1A
CIViC (Clinical Interpretations of Variants in Cancer)TAF1A
Cancer3DTAF1A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604903   
Orphanet
DisGeNETTAF1A
MedgenTAF1A
Genetic Testing Registry TAF1A
NextProtQ15573 [Medical]
GENETestsTAF1A
Target ValidationTAF1A
Huge Navigator TAF1A [HugePedia]
ClinGenTAF1A
Clinical trials, drugs, therapy
MyCancerGenomeTAF1A
Protein Interactions : CTDTAF1A
Pharm GKB GenePA36307
PharosQ15573
Clinical trialTAF1A
Miscellaneous
canSAR (ICR)TAF1A
HarmonizomeTAF1A
DataMed IndexTAF1A
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAF1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:46 CEST 2021

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