Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A)

Identity

Alias_namesTATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kD
TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa
Alias_symbol (synonym)TAFI48
SL1
Other aliasMGC:17061
RAFI48
HGNC (Hugo) TAF1A
LocusID (NCBI) 9015
Atlas_Id 74464
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 222557902 and ends at 222589933 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAF1A (1q41) / SLC12A7 (5p15.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF1A   11532
Cards
Entrez_Gene (NCBI)TAF1A  9015  TATA-box binding protein associated factor, RNA polymerase I subunit A
AliasesMGC:17061; RAFI48; SL1; TAFI48
GeneCards (Weizmann)TAF1A
Ensembl hg19 (Hinxton)ENSG00000143498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143498 [Gene_View]  chr1:222557902-222589933 [Contig_View]  TAF1A [Vega]
ICGC DataPortalENSG00000143498
TCGA cBioPortalTAF1A
AceView (NCBI)TAF1A
Genatlas (Paris)TAF1A
WikiGenes9015
SOURCE (Princeton)TAF1A
Genetics Home Reference (NIH)TAF1A
Genomic and cartography
GoldenPath hg38 (UCSC)TAF1A  -     chr1:222557902-222589933 -  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF1A  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblTAF1A - 1q41 [CytoView hg19]  TAF1A - 1q41 [CytoView hg38]
Mapping of homologs : NCBITAF1A [Mapview hg19]  TAF1A [Mapview hg38]
OMIM604903   
Gene and transcription
Genbank (Entrez)AK001054 AK290970 AK299536 AK307882 AK315740
RefSeq transcript (Entrez)NM_001201536 NM_005681 NM_139352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF1A
Cluster EST : UnigeneHs.153088 [ NCBI ]
CGAP (NCI)Hs.153088
Alternative Splicing GalleryENSG00000143498
Gene ExpressionTAF1A [ NCBI-GEO ]   TAF1A [ EBI - ARRAY_EXPRESS ]   TAF1A [ SEEK ]   TAF1A [ MEM ]
Gene Expression Viewer (FireBrowse)TAF1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9015
GTEX Portal (Tissue expression)TAF1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15573   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15573  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15573
Splice isoforms : SwissVarQ15573
PhosPhoSitePlusQ15573
Domains : Interpro (EBI)RNA_pol_I_TAF1A/TAFI48   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TAF1A
DMDM Disease mutations9015
Blocks (Seattle)TAF1A
SuperfamilyQ15573
Human Protein AtlasENSG00000143498
Peptide AtlasQ15573
HPRD05362
IPIIPI00024263   IPI00157541   IPI01013182   IPI00552206   
Protein Interaction databases
DIP (DOE-UCLA)Q15573
IntAct (EBI)Q15573
FunCoupENSG00000143498
BioGRIDTAF1A
STRING (EMBL)TAF1A
ZODIACTAF1A
Ontologies - Pathways
QuickGOQ15573
Ontology : AmiGORNA polymerase I transcription factor complex  DNA binding  protein binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase I promoter  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription from RNA polymerase II promoter  microtubule cytoskeleton  intracellular membrane-bounded organelle  positive regulation of gene expression, epigenetic  
Ontology : EGO-EBIRNA polymerase I transcription factor complex  DNA binding  protein binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase I promoter  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription from RNA polymerase II promoter  microtubule cytoskeleton  intracellular membrane-bounded organelle  positive regulation of gene expression, epigenetic  
NDEx NetworkTAF1A
Atlas of Cancer Signalling NetworkTAF1A
Wikipedia pathwaysTAF1A
Orthology - Evolution
OrthoDB9015
GeneTree (enSembl)ENSG00000143498
Phylogenetic Trees/Animal Genes : TreeFamTAF1A
HOVERGENQ15573
HOGENOMQ15573
Homologs : HomoloGeneTAF1A
Homology/Alignments : Family Browser (UCSC)TAF1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF1A
dbVarTAF1A
ClinVarTAF1A
1000_GenomesTAF1A 
Exome Variant ServerTAF1A
ExAC (Exome Aggregation Consortium)TAF1A (select the gene name)
Genetic variants : HAPMAP9015
Genomic Variants (DGV)TAF1A [DGVbeta]
DECIPHERTAF1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF1A 
Mutations
ICGC Data PortalTAF1A 
TCGA Data PortalTAF1A 
Broad Tumor PortalTAF1A
OASIS PortalTAF1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF1A
DgiDB (Drug Gene Interaction Database)TAF1A
DoCM (Curated mutations)TAF1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF1A (select a term)
intoGenTAF1A
Cancer3DTAF1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604903   
Orphanet
MedgenTAF1A
Genetic Testing Registry TAF1A
NextProtQ15573 [Medical]
TSGene9015
GENETestsTAF1A
Target ValidationTAF1A
Huge Navigator TAF1A [HugePedia]
snp3D : Map Gene to Disease9015
BioCentury BCIQTAF1A
ClinGenTAF1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9015
Chemical/Pharm GKB GenePA36307
Clinical trialTAF1A
Miscellaneous
canSAR (ICR)TAF1A (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF1A
EVEXTAF1A
GoPubMedTAF1A
iHOPTAF1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:40:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.