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TAF1C (TATA-box binding protein associated factor, RNA polymerase I subunit C)

Identity

Alias_namesTATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kD
TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa
Alias_symbol (synonym)TAFI110
TAFI95
SL1
MGC:39976
Other alias
HGNC (Hugo) TAF1C
LocusID (NCBI) 9013
Atlas_Id 55405
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 84177847 and ends at 84187070 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF1C   11534
Cards
Entrez_Gene (NCBI)TAF1C  9013  TATA-box binding protein associated factor, RNA polymerase I subunit C
AliasesMGC:39976; SL1; TAFI110; TAFI95
GeneCards (Weizmann)TAF1C
Ensembl hg19 (Hinxton)ENSG00000103168 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103168 [Gene_View]  chr16:84177847-84187070 [Contig_View]  TAF1C [Vega]
ICGC DataPortalENSG00000103168
TCGA cBioPortalTAF1C
AceView (NCBI)TAF1C
Genatlas (Paris)TAF1C
WikiGenes9013
SOURCE (Princeton)TAF1C
Genetics Home Reference (NIH)TAF1C
Genomic and cartography
GoldenPath hg38 (UCSC)TAF1C  -     chr16:84177847-84187070 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF1C  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblTAF1C - 16q24.1 [CytoView hg19]  TAF1C - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBITAF1C [Mapview hg19]  TAF1C [Mapview hg38]
OMIM604905   
Gene and transcription
Genbank (Entrez)AB209594 AK097031 AK299060 AK299347 AK304261
RefSeq transcript (Entrez)NM_001243156 NM_001243157 NM_001243158 NM_001243159 NM_001243160 NM_005679 NM_139353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF1C
Cluster EST : UnigeneHs.153022 [ NCBI ]
CGAP (NCI)Hs.153022
Alternative Splicing GalleryENSG00000103168
Gene ExpressionTAF1C [ NCBI-GEO ]   TAF1C [ EBI - ARRAY_EXPRESS ]   TAF1C [ SEEK ]   TAF1C [ MEM ]
Gene Expression Viewer (FireBrowse)TAF1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9013
GTEX Portal (Tissue expression)TAF1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15572   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15572  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15572
Splice isoforms : SwissVarQ15572
PhosPhoSitePlusQ15572
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TAF1C
DMDM Disease mutations9013
Blocks (Seattle)TAF1C
SuperfamilyQ15572
Human Protein AtlasENSG00000103168
Peptide AtlasQ15572
HPRD05364
IPIIPI00246842   IPI00328322   IPI00944609   IPI00944618   IPI01019128   IPI00944587   IPI01011153   
Protein Interaction databases
DIP (DOE-UCLA)Q15572
IntAct (EBI)Q15572
FunCoupENSG00000103168
BioGRIDTAF1C
STRING (EMBL)TAF1C
ZODIACTAF1C
Ontologies - Pathways
QuickGOQ15572
Ontology : AmiGORNA polymerase I transcription factor complex  RNA polymerase I CORE element sequence-specific DNA binding  fibrillar center  protein binding  nucleoplasm  nucleolus  regulation of transcription from RNA polymerase I promoter  transcription from RNA polymerase I promoter  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription from RNA polymerase II promoter  positive regulation of gene expression, epigenetic  
Ontology : EGO-EBIRNA polymerase I transcription factor complex  RNA polymerase I CORE element sequence-specific DNA binding  fibrillar center  protein binding  nucleoplasm  nucleolus  regulation of transcription from RNA polymerase I promoter  transcription from RNA polymerase I promoter  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription from RNA polymerase II promoter  positive regulation of gene expression, epigenetic  
NDEx NetworkTAF1C
Atlas of Cancer Signalling NetworkTAF1C
Wikipedia pathwaysTAF1C
Orthology - Evolution
OrthoDB9013
GeneTree (enSembl)ENSG00000103168
Phylogenetic Trees/Animal Genes : TreeFamTAF1C
HOVERGENQ15572
HOGENOMQ15572
Homologs : HomoloGeneTAF1C
Homology/Alignments : Family Browser (UCSC)TAF1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF1C
dbVarTAF1C
ClinVarTAF1C
1000_GenomesTAF1C 
Exome Variant ServerTAF1C
ExAC (Exome Aggregation Consortium)TAF1C (select the gene name)
Genetic variants : HAPMAP9013
Genomic Variants (DGV)TAF1C [DGVbeta]
DECIPHERTAF1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF1C 
Mutations
ICGC Data PortalTAF1C 
TCGA Data PortalTAF1C 
Broad Tumor PortalTAF1C
OASIS PortalTAF1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF1C
DgiDB (Drug Gene Interaction Database)TAF1C
DoCM (Curated mutations)TAF1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF1C (select a term)
intoGenTAF1C
Cancer3DTAF1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604905   
Orphanet
MedgenTAF1C
Genetic Testing Registry TAF1C
NextProtQ15572 [Medical]
TSGene9013
GENETestsTAF1C
Target ValidationTAF1C
Huge Navigator TAF1C [HugePedia]
snp3D : Map Gene to Disease9013
BioCentury BCIQTAF1C
ClinGenTAF1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9013
Chemical/Pharm GKB GenePA36309
Clinical trialTAF1C
Miscellaneous
canSAR (ICR)TAF1C (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF1C
EVEXTAF1C
GoPubMedTAF1C
iHOPTAF1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:34:06 CEST 2017

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