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TAF1D (TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa)

Identity

Alias_namesJOSD3
Josephin domain containing 3
TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
Alias_symbol (synonym)MGC5306
TAF(I)41
Other aliasRAFI41
TAFI41
HGNC (Hugo) TAF1D
LocusID (NCBI) 79101
Atlas_Id 74467
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93469096 and ends at 93474703 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CYTH2 (19q13.33) / TAF1D (11q21)GTPBP1 (22q13.1) / TAF1D (11q21)TAF1D (11q21) / COASY (17q21.2)
TAF1D (11q21) / ERMN (2q24.1)TAF1D (11q21) / PIK3CA (3q26.32)TAF1D (11q21) / SCAF8 (6q25.2)
TAF1D (11q21) / TAF1D (11q21)TAF1D (11q21) / TRPC4AP (20q11.22)TAF1D (11q21) / TRUB1 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF1D   28759
Cards
Entrez_Gene (NCBI)TAF1D  79101  TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
AliasesJOSD3; RAFI41; TAF(I)41; TAFI41
GeneCards (Weizmann)TAF1D
Ensembl hg19 (Hinxton) [Gene_View]  chr11:93469096-93474703 [Contig_View]  TAF1D [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:93469096-93474703 [Contig_View]  TAF1D [Vega]
TCGA cBioPortalTAF1D
AceView (NCBI)TAF1D
Genatlas (Paris)TAF1D
WikiGenes79101
SOURCE (Princeton)TAF1D
Genetics Home Reference (NIH)TAF1D
Genomic and cartography
GoldenPath hg19 (UCSC)TAF1D  -     chr11:93469096-93474703 -  11q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TAF1D  -     11q21   [Description]    (hg38-Dec_2013)
EnsemblTAF1D - 11q21 [CytoView hg19]  TAF1D - 11q21 [CytoView hg38]
Mapping of homologs : NCBITAF1D [Mapview hg19]  TAF1D [Mapview hg38]
OMIM612823   
Gene and transcription
Genbank (Entrez)AF086435 AF275800 AK027016 AK057183 AK128061
RefSeq transcript (Entrez)NM_024116
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929380
Consensus coding sequences : CCDS (NCBI)TAF1D
Cluster EST : UnigeneHs.355750 [ NCBI ]
CGAP (NCI)Hs.355750
Gene ExpressionTAF1D [ NCBI-GEO ]   TAF1D [ EBI - ARRAY_EXPRESS ]   TAF1D [ SEEK ]   TAF1D [ MEM ]
Gene Expression Viewer (FireBrowse)TAF1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79101
GTEX Portal (Tissue expression)TAF1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5J8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5J8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5J8
Splice isoforms : SwissVarQ9H5J8
PhosPhoSitePlusQ9H5J8
Domains : Interpro (EBI)TAF1D   
Domain families : Pfam (Sanger)TAF1D (PF15333)   
Domain families : Pfam (NCBI)pfam15333   
Conserved Domain (NCBI)TAF1D
DMDM Disease mutations79101
Blocks (Seattle)TAF1D
SuperfamilyQ9H5J8
Peptide AtlasQ9H5J8
HPRD14679
IPIIPI00012225   IPI00387003   IPI00978248   IPI00983718   IPI00978936   IPI01009649   IPI01014754   IPI01010786   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5J8
IntAct (EBI)Q9H5J8
BioGRIDTAF1D
STRING (EMBL)TAF1D
ZODIACTAF1D
Ontologies - Pathways
QuickGOQ9H5J8
Ontology : AmiGOchromatin silencing at rDNA  DNA binding  protein binding  nucleoplasm  nucleoplasm  RNA polymerase transcription factor SL1 complex  microtubule organizing center  transcription from RNA polymerase I promoter  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  gene expression  regulation of gene expression, epigenetic  negative regulation of gene expression, epigenetic  
Ontology : EGO-EBIchromatin silencing at rDNA  DNA binding  protein binding  nucleoplasm  nucleoplasm  RNA polymerase transcription factor SL1 complex  microtubule organizing center  transcription from RNA polymerase I promoter  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  gene expression  regulation of gene expression, epigenetic  negative regulation of gene expression, epigenetic  
NDEx NetworkTAF1D
Atlas of Cancer Signalling NetworkTAF1D
Wikipedia pathwaysTAF1D
Orthology - Evolution
OrthoDB79101
Phylogenetic Trees/Animal Genes : TreeFamTAF1D
HOVERGENQ9H5J8
HOGENOMQ9H5J8
Homologs : HomoloGeneTAF1D
Homology/Alignments : Family Browser (UCSC)TAF1D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF1D
dbVarTAF1D
ClinVarTAF1D
1000_GenomesTAF1D 
Exome Variant ServerTAF1D
ExAC (Exome Aggregation Consortium)TAF1D (select the gene name)
Genetic variants : HAPMAP79101
Genomic Variants (DGV)TAF1D [DGVbeta]
DECIPHER (Syndromes)11:93469096-93474703  
CONAN: Copy Number AnalysisTAF1D 
Mutations
ICGC Data PortalTAF1D 
TCGA Data PortalTAF1D 
Broad Tumor PortalTAF1D
OASIS PortalTAF1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF1D
DgiDB (Drug Gene Interaction Database)TAF1D
DoCM (Curated mutations)TAF1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF1D (select a term)
intoGenTAF1D
Cancer3DTAF1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612823   
Orphanet
MedgenTAF1D
Genetic Testing Registry TAF1D
NextProtQ9H5J8 [Medical]
TSGene79101
GENETestsTAF1D
Huge Navigator TAF1D [HugePedia]
snp3D : Map Gene to Disease79101
BioCentury BCIQTAF1D
ClinGenTAF1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79101
Chemical/Pharm GKB GenePA164726421
Clinical trialTAF1D
Miscellaneous
canSAR (ICR)TAF1D (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF1D
EVEXTAF1D
GoPubMedTAF1D
iHOPTAF1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:21 CET 2017

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