Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAF1L (TATA-box binding protein associated factor 1 like)

Identity

Alias_namesTAF1-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like
Other aliasTAF(II)210
TAF2A2
HGNC (Hugo) TAF1L
LocusID (NCBI) 138474
Atlas_Id 43524
Location 9p21.1  [Link to chromosome band 9p21]
Location_base_pair Starts at 32629452 and ends at 32635667 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF1L   18056
Cards
Entrez_Gene (NCBI)TAF1L  138474  TATA-box binding protein associated factor 1 like
AliasesTAF(II)210; TAF2A2
GeneCards (Weizmann)TAF1L
Ensembl hg19 (Hinxton)ENSG00000122728 [Gene_View]  chr9:32629452-32635667 [Contig_View]  TAF1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000122728 [Gene_View]  chr9:32629452-32635667 [Contig_View]  TAF1L [Vega]
ICGC DataPortalENSG00000122728
TCGA cBioPortalTAF1L
AceView (NCBI)TAF1L
Genatlas (Paris)TAF1L
WikiGenes138474
SOURCE (Princeton)TAF1L
Genetics Home Reference (NIH)TAF1L
Genomic and cartography
GoldenPath hg19 (UCSC)TAF1L  -     chr9:32629452-32635667 -  9p21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TAF1L  -     9p21.1   [Description]    (hg38-Dec_2013)
EnsemblTAF1L - 9p21.1 [CytoView hg19]  TAF1L - 9p21.1 [CytoView hg38]
Mapping of homologs : NCBITAF1L [Mapview hg19]  TAF1L [Mapview hg38]
OMIM607798   
Gene and transcription
Genbank (Entrez)AF390562 BC116181 BC116182 BC172227
RefSeq transcript (Entrez)NM_153809
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)TAF1L
Cluster EST : UnigeneHs.591086 [ NCBI ]
CGAP (NCI)Hs.591086
Alternative Splicing GalleryENSG00000122728
Gene ExpressionTAF1L [ NCBI-GEO ]   TAF1L [ EBI - ARRAY_EXPRESS ]   TAF1L [ SEEK ]   TAF1L [ MEM ]
Gene Expression Viewer (FireBrowse)TAF1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138474
GTEX Portal (Tissue expression)TAF1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZX4
Splice isoforms : SwissVarQ8IZX4
PhosPhoSitePlusQ8IZX4
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)   
Domains : Interpro (EBI)Bromodomain    Bromodomain_CS    TAF1_animal    TAF_II_230-bd    TFIID_sub1_DUF3591   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    DUF3591 (PF12157)    TBP-binding (PF09247)   
Domain families : Pfam (NCBI)pfam00439    pfam12157    pfam09247   
Domain families : Smart (EMBL)BROMO (SM00297)  
Conserved Domain (NCBI)TAF1L
DMDM Disease mutations138474
Blocks (Seattle)TAF1L
PDB (SRS)3HMH   
PDB (PDBSum)3HMH   
PDB (IMB)3HMH   
PDB (RSDB)3HMH   
Structural Biology KnowledgeBase3HMH   
SCOP (Structural Classification of Proteins)3HMH   
CATH (Classification of proteins structures)3HMH   
SuperfamilyQ8IZX4
Human Protein AtlasENSG00000122728
Peptide AtlasQ8IZX4
HPRD09696
IPIIPI00100867   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZX4
IntAct (EBI)Q8IZX4
FunCoupENSG00000122728
BioGRIDTAF1L
STRING (EMBL)TAF1L
ZODIACTAF1L
Ontologies - Pathways
QuickGOQ8IZX4
Ontology : AmiGODNA binding  histone acetyltransferase activity  protein serine/threonine kinase activity  cellular_component  nucleoplasm  transcription factor TFIID complex  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  protein phosphorylation  male meiosis  histone acetylation  TBP-class protein binding  positive regulation of transcription, DNA-templated  lysine-acetylated histone binding  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIDNA binding  histone acetyltransferase activity  protein serine/threonine kinase activity  cellular_component  nucleoplasm  transcription factor TFIID complex  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  protein phosphorylation  male meiosis  histone acetylation  TBP-class protein binding  positive regulation of transcription, DNA-templated  lysine-acetylated histone binding  regulation of signal transduction by p53 class mediator  
Pathways : KEGGBasal transcription factors   
NDEx NetworkTAF1L
Atlas of Cancer Signalling NetworkTAF1L
Wikipedia pathwaysTAF1L
Orthology - Evolution
OrthoDB138474
GeneTree (enSembl)ENSG00000122728
Phylogenetic Trees/Animal Genes : TreeFamTAF1L
HOVERGENQ8IZX4
HOGENOMQ8IZX4
Homologs : HomoloGeneTAF1L
Homology/Alignments : Family Browser (UCSC)TAF1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF1L
dbVarTAF1L
ClinVarTAF1L
1000_GenomesTAF1L 
Exome Variant ServerTAF1L
ExAC (Exome Aggregation Consortium)TAF1L (select the gene name)
Genetic variants : HAPMAP138474
Genomic Variants (DGV)TAF1L [DGVbeta]
DECIPHER (Syndromes)9:32629452-32635667  ENSG00000122728
CONAN: Copy Number AnalysisTAF1L 
Mutations
ICGC Data PortalTAF1L 
TCGA Data PortalTAF1L 
Broad Tumor PortalTAF1L
OASIS PortalTAF1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF1L
DgiDB (Drug Gene Interaction Database)TAF1L
DoCM (Curated mutations)TAF1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF1L (select a term)
intoGenTAF1L
Cancer3DTAF1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607798   
Orphanet
MedgenTAF1L
Genetic Testing Registry TAF1L
NextProtQ8IZX4 [Medical]
TSGene138474
GENETestsTAF1L
Huge Navigator TAF1L [HugePedia]
snp3D : Map Gene to Disease138474
BioCentury BCIQTAF1L
ClinGenTAF1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138474
Chemical/Pharm GKB GenePA134947802
Clinical trialTAF1L
Miscellaneous
canSAR (ICR)TAF1L (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF1L
EVEXTAF1L
GoPubMedTAF1L
iHOPTAF1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:21:44 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.