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TAF2 (TATA-box binding protein associated factor 2)

Identity

Alias (NCBI)CIF150
MRT40
TAF2B
TAFII150
HGNC (Hugo) TAF2
HGNC Alias symbTAFII150
CIF150
HGNC Previous nameTAF2B
HGNC Previous nameTATA box binding protein (TBP)-associated factor, RNA polymerase II, B, 150kD
 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
LocusID (NCBI) 6873
Atlas_Id 74468
Location 8q24.12  [Link to chromosome band 8q24]
Location_base_pair Starts at 119730774 and ends at 119832841 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NAPEPLD (7q22.1) / TAF2 (8q24.12)TAF2 (8q24.12) / ALDH16A1 (19q13.33)TAF2 (8q24.12) / DSCC1 (8q24.12)
TAF2 (8q24.12) / TAF2 (8q24.12)TAF2 ALDH16A1TAF2 DSCC1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAF2   11536
Cards
Entrez_Gene (NCBI)TAF2    TATA-box binding protein associated factor 2
AliasesCIF150; MRT40; TAF2B; TAFII150
GeneCards (Weizmann)TAF2
Ensembl hg19 (Hinxton)ENSG00000064313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064313 [Gene_View]  ENSG00000064313 [Sequence]  chr8:119730774-119832841 [Contig_View]  TAF2 [Vega]
ICGC DataPortalENSG00000064313
TCGA cBioPortalTAF2
AceView (NCBI)TAF2
Genatlas (Paris)TAF2
SOURCE (Princeton)TAF2
Genetics Home Reference (NIH)TAF2
Genomic and cartography
GoldenPath hg38 (UCSC)TAF2  -     chr8:119730774-119832841 -  8q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF2  -     8q24.12   [Description]    (hg19-Feb_2009)
GoldenPathTAF2 - 8q24.12 [CytoView hg19]  TAF2 - 8q24.12 [CytoView hg38]
ImmunoBaseENSG00000064313
Genome Data Viewer NCBITAF2 [Mapview hg19]  
OMIM604912   615599   
Gene and transcription
Genbank (Entrez)AF026445 AF040701 AF057694 AK001618 AK001909
RefSeq transcript (Entrez)NM_003184
Consensus coding sequences : CCDS (NCBI)TAF2
Gene ExpressionTAF2 [ NCBI-GEO ]   TAF2 [ EBI - ARRAY_EXPRESS ]   TAF2 [ SEEK ]   TAF2 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF2 [ Firebrowse - Broad ]
GenevisibleExpression of TAF2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6873
GTEX Portal (Tissue expression)TAF2
Human Protein AtlasENSG00000064313-TAF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1X5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1X5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1X5
PhosPhoSitePlusQ6P1X5
Domains : Interpro (EBI)Aminopeptidase_N-like_N    ARM-type_fold    TAF2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TAF2
PDB (RSDB)5FUR    6MZC    6MZL    6MZM   
PDB Europe5FUR    6MZC    6MZL    6MZM   
PDB (PDBSum)5FUR    6MZC    6MZL    6MZM   
PDB (IMB)5FUR    6MZC    6MZL    6MZM   
Structural Biology KnowledgeBase5FUR    6MZC    6MZL    6MZM   
SCOP (Structural Classification of Proteins)5FUR    6MZC    6MZL    6MZM   
CATH (Classification of proteins structures)5FUR    6MZC    6MZL    6MZM   
SuperfamilyQ6P1X5
AlphaFold pdb e-kbQ6P1X5   
Human Protein Atlas [tissue]ENSG00000064313-TAF2 [tissue]
HPRD07060
Protein Interaction databases
DIP (DOE-UCLA)Q6P1X5
IntAct (EBI)Q6P1X5
BioGRIDTAF2
STRING (EMBL)TAF2
ZODIACTAF2
Ontologies - Pathways
QuickGOQ6P1X5
Ontology : AmiGOG2/M transition of mitotic cell cycle  transcription cis-regulatory region binding  transcription cis-regulatory region binding  chromatin binding  protein binding  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  response to organic cyclic compound  RNA polymerase II general transcription initiation factor activity  RNA polymerase II general transcription initiation factor activity  transcription factor TFTC complex  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  transcription cis-regulatory region binding  transcription cis-regulatory region binding  chromatin binding  protein binding  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  response to organic cyclic compound  RNA polymerase II general transcription initiation factor activity  RNA polymerase II general transcription initiation factor activity  transcription factor TFTC complex  regulation of signal transduction by p53 class mediator  
Pathways : KEGGBasal transcription factors   
NDEx NetworkTAF2
Atlas of Cancer Signalling NetworkTAF2
Wikipedia pathwaysTAF2
Orthology - Evolution
OrthoDB6873
GeneTree (enSembl)ENSG00000064313
Phylogenetic Trees/Animal Genes : TreeFamTAF2
Homologs : HomoloGeneTAF2
Homology/Alignments : Family Browser (UCSC)TAF2
Gene fusions - Rearrangements
Fusion : QuiverTAF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF2
dbVarTAF2
ClinVarTAF2
MonarchTAF2
1000_GenomesTAF2 
Exome Variant ServerTAF2
GNOMAD BrowserENSG00000064313
Varsome BrowserTAF2
ACMGTAF2 variants
VarityQ6P1X5
Genomic Variants (DGV)TAF2 [DGVbeta]
DECIPHERTAF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF2 
Mutations
ICGC Data PortalTAF2 
TCGA Data PortalTAF2 
Broad Tumor PortalTAF2
OASIS PortalTAF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAF2
Mutations and Diseases : HGMDTAF2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAF2
DgiDB (Drug Gene Interaction Database)TAF2
DoCM (Curated mutations)TAF2
CIViC (Clinical Interpretations of Variants in Cancer)TAF2
Cancer3DTAF2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604912    615599   
Orphanet22711   
DisGeNETTAF2
MedgenTAF2
Genetic Testing Registry TAF2
NextProtQ6P1X5 [Medical]
GENETestsTAF2
Target ValidationTAF2
Huge Navigator TAF2 [HugePedia]
ClinGenTAF2
Clinical trials, drugs, therapy
MyCancerGenomeTAF2
Protein Interactions : CTDTAF2
Pharm GKB GenePA36311
PharosQ6P1X5
Clinical trialTAF2
Miscellaneous
canSAR (ICR)TAF2
HarmonizomeTAF2
DataMed IndexTAF2
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:47 CEST 2021

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