Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAF3 (TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa)

Identity

Alias_namesTAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140 kD
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa
Alias_symbol (synonym)TAF140
TAFII140
Other aliasTAFII-140
HGNC (Hugo) TAF3
LocusID (NCBI) 83860
Atlas_Id 74469
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 7860467 and ends at 8057016 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GATA3 (10p14) / TAF3 (10p14)HSP90AB1 (6p21.1) / TAF3 (10p14)PTMS (12p13.31) / TAF3 (10p14)
TAF3 (10p14) / ATP5C1 (10p14)TAF3 (10p14) / DNAJC1 (10p12.31)TAF3 (10p14) / ZDHHC14 (6q25.3)
ZNF197 (3p21.31) / TAF3 (10p14)TAF3 DNAJC1TAF3 ATP5C1
TAF3 ZDHHC14HSP90AB1 TAF3GATA3 TAF3
PTMS TAF3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF3   17303
Cards
Entrez_Gene (NCBI)TAF3  83860  TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa
AliasesTAF140; TAFII-140; TAFII140
GeneCards (Weizmann)TAF3
Ensembl hg19 (Hinxton)ENSG00000165632 [Gene_View]  chr10:7860467-8057016 [Contig_View]  TAF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165632 [Gene_View]  chr10:7860467-8057016 [Contig_View]  TAF3 [Vega]
ICGC DataPortalENSG00000165632
TCGA cBioPortalTAF3
AceView (NCBI)TAF3
Genatlas (Paris)TAF3
WikiGenes83860
SOURCE (Princeton)TAF3
Genetics Home Reference (NIH)TAF3
Genomic and cartography
GoldenPath hg19 (UCSC)TAF3  -     chr10:7860467-8057016 +  10p14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TAF3  -     10p14   [Description]    (hg38-Dec_2013)
EnsemblTAF3 - 10p14 [CytoView hg19]  TAF3 - 10p14 [CytoView hg38]
Mapping of homologs : NCBITAF3 [Mapview hg19]  TAF3 [Mapview hg38]
OMIM606576   
Gene and transcription
Genbank (Entrez)AJ292190 AK123254 AK307521 AK307657 AL117661
RefSeq transcript (Entrez)NM_031923
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)TAF3
Cluster EST : UnigeneHs.709995 [ NCBI ]
CGAP (NCI)Hs.709995
Alternative Splicing GalleryENSG00000165632
Gene ExpressionTAF3 [ NCBI-GEO ]   TAF3 [ EBI - ARRAY_EXPRESS ]   TAF3 [ SEEK ]   TAF3 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83860
GTEX Portal (Tissue expression)TAF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWG9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWG9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWG9
Splice isoforms : SwissVarQ5VWG9
PhosPhoSitePlusQ5VWG9
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)BTP    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Bromo_TP (PF07524)    PHD (PF00628)   
Domain families : Pfam (NCBI)pfam07524    pfam00628   
Domain families : Smart (EMBL)BTP (SM00576)  PHD (SM00249)  
Conserved Domain (NCBI)TAF3
DMDM Disease mutations83860
Blocks (Seattle)TAF3
SuperfamilyQ5VWG9
Human Protein AtlasENSG00000165632
Peptide AtlasQ5VWG9
IPIIPI00853240   IPI01012932   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWG9
IntAct (EBI)Q5VWG9
FunCoupENSG00000165632
BioGRIDTAF3
STRING (EMBL)TAF3
ZODIACTAF3
Ontologies - Pathways
QuickGOQ5VWG9
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  p53 binding  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  zinc ion binding  gene expression  viral process  negative regulation of sequence-specific DNA binding transcription factor activity  maintenance of protein location in nucleus  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  p53 binding  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  zinc ion binding  gene expression  viral process  negative regulation of sequence-specific DNA binding transcription factor activity  maintenance of protein location in nucleus  
Pathways : KEGGBasal transcription factors    Herpes simplex infection   
NDEx NetworkTAF3
Atlas of Cancer Signalling NetworkTAF3
Wikipedia pathwaysTAF3
Orthology - Evolution
OrthoDB83860
GeneTree (enSembl)ENSG00000165632
Phylogenetic Trees/Animal Genes : TreeFamTAF3
HOVERGENQ5VWG9
HOGENOMQ5VWG9
Homologs : HomoloGeneTAF3
Homology/Alignments : Family Browser (UCSC)TAF3
Gene fusions - Rearrangements
Fusion: TCGATAF3 DNAJC1
Fusion: TCGATAF3 ATP5C1
Fusion: TCGATAF3 ZDHHC14
Fusion: TCGAHSP90AB1 TAF3
Fusion: TCGAGATA3 TAF3
Fusion: TCGAPTMS TAF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF3
dbVarTAF3
ClinVarTAF3
1000_GenomesTAF3 
Exome Variant ServerTAF3
ExAC (Exome Aggregation Consortium)TAF3 (select the gene name)
Genetic variants : HAPMAP83860
Genomic Variants (DGV)TAF3 [DGVbeta]
DECIPHER (Syndromes)10:7860467-8057016  ENSG00000165632
CONAN: Copy Number AnalysisTAF3 
Mutations
ICGC Data PortalTAF3 
TCGA Data PortalTAF3 
Broad Tumor PortalTAF3
OASIS PortalTAF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF3
DgiDB (Drug Gene Interaction Database)TAF3
DoCM (Curated mutations)TAF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF3 (select a term)
intoGenTAF3
Cancer3DTAF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606576   
Orphanet
MedgenTAF3
Genetic Testing Registry TAF3
NextProtQ5VWG9 [Medical]
TSGene83860
GENETestsTAF3
Huge Navigator TAF3 [HugePedia]
snp3D : Map Gene to Disease83860
BioCentury BCIQTAF3
ClinGenTAF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83860
Chemical/Pharm GKB GenePA38222
Clinical trialTAF3
Miscellaneous
canSAR (ICR)TAF3 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF3
EVEXTAF3
GoPubMedTAF3
iHOPTAF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:47:21 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.