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TAF5 (TATA-box binding protein associated factor 5)

Identity

Alias_namesTAF2D
TATA box binding protein (TBP)-associated factor, RNA polymerase II, D, 100kD
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa
Alias_symbol (synonym)TAFII100
Other aliasTAF(II)100
TAFII-100
HGNC (Hugo) TAF5
LocusID (NCBI) 6877
Atlas_Id 74470
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103367953 and ends at 103389066 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDCD11 (10q24.33) / TAF5 (10q24.33)TAF5 (10q24.33) / TAF5 (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF5   11539
Cards
Entrez_Gene (NCBI)TAF5  6877  TATA-box binding protein associated factor 5
AliasesTAF(II)100; TAF2D; TAFII-100; TAFII100
GeneCards (Weizmann)TAF5
Ensembl hg19 (Hinxton)ENSG00000148835 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148835 [Gene_View]  chr10:103367953-103389066 [Contig_View]  TAF5 [Vega]
ICGC DataPortalENSG00000148835
TCGA cBioPortalTAF5
AceView (NCBI)TAF5
Genatlas (Paris)TAF5
WikiGenes6877
SOURCE (Princeton)TAF5
Genetics Home Reference (NIH)TAF5
Genomic and cartography
GoldenPath hg38 (UCSC)TAF5  -     chr10:103367953-103389066 +  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF5  -     10q24.33   [Description]    (hg19-Feb_2009)
EnsemblTAF5 - 10q24.33 [CytoView hg19]  TAF5 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBITAF5 [Mapview hg19]  TAF5 [Mapview hg38]
OMIM601787   
Gene and transcription
Genbank (Entrez)AK223615 AK291229 AL137373 AW136916 BC052268
RefSeq transcript (Entrez)NM_006951 NM_139052
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF5
Cluster EST : UnigeneHs.96103 [ NCBI ]
CGAP (NCI)Hs.96103
Alternative Splicing GalleryENSG00000148835
Gene ExpressionTAF5 [ NCBI-GEO ]   TAF5 [ EBI - ARRAY_EXPRESS ]   TAF5 [ SEEK ]   TAF5 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6877
GTEX Portal (Tissue expression)TAF5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15542   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15542  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15542
Splice isoforms : SwissVarQ15542
PhosPhoSitePlusQ15542
Domaine pattern : Prosite (Expaxy)LISH (PS50896)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    LisH    TFIID_NTD2    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)TFIID_NTD2 (PF04494)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam04494    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)TAF5
DMDM Disease mutations6877
Blocks (Seattle)TAF5
PDB (SRS)2NXP   
PDB (PDBSum)2NXP   
PDB (IMB)2NXP   
PDB (RSDB)2NXP   
Structural Biology KnowledgeBase2NXP   
SCOP (Structural Classification of Proteins)2NXP   
CATH (Classification of proteins structures)2NXP   
SuperfamilyQ15542
Human Protein AtlasENSG00000148835
Peptide AtlasQ15542
HPRD11876
IPIIPI00298925   IPI00298926   
Protein Interaction databases
DIP (DOE-UCLA)Q15542
IntAct (EBI)Q15542
FunCoupENSG00000148835
BioGRIDTAF5
STRING (EMBL)TAF5
ZODIACTAF5
Ontologies - Pathways
QuickGOQ15542
Ontology : AmiGOnuclear chromatin  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription factor TFIID complex  nucleolus  chromatin organization  DNA-templated transcription, initiation  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  actin cytoskeleton  viral process  histone acetylation  transcription factor TFTC complex  snRNA transcription from RNA polymerase II promoter  transcription regulatory region DNA binding  protein dimerization activity  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBInuclear chromatin  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription factor TFIID complex  nucleolus  chromatin organization  DNA-templated transcription, initiation  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  actin cytoskeleton  viral process  histone acetylation  transcription factor TFTC complex  snRNA transcription from RNA polymerase II promoter  transcription regulatory region DNA binding  protein dimerization activity  regulation of signal transduction by p53 class mediator  
Pathways : KEGGBasal transcription factors    Herpes simplex infection   
NDEx NetworkTAF5
Atlas of Cancer Signalling NetworkTAF5
Wikipedia pathwaysTAF5
Orthology - Evolution
OrthoDB6877
GeneTree (enSembl)ENSG00000148835
Phylogenetic Trees/Animal Genes : TreeFamTAF5
HOVERGENQ15542
HOGENOMQ15542
Homologs : HomoloGeneTAF5
Homology/Alignments : Family Browser (UCSC)TAF5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF5
dbVarTAF5
ClinVarTAF5
1000_GenomesTAF5 
Exome Variant ServerTAF5
ExAC (Exome Aggregation Consortium)TAF5 (select the gene name)
Genetic variants : HAPMAP6877
Genomic Variants (DGV)TAF5 [DGVbeta]
DECIPHERTAF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF5 
Mutations
ICGC Data PortalTAF5 
TCGA Data PortalTAF5 
Broad Tumor PortalTAF5
OASIS PortalTAF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF5
DgiDB (Drug Gene Interaction Database)TAF5
DoCM (Curated mutations)TAF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF5 (select a term)
intoGenTAF5
Cancer3DTAF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601787   
Orphanet
MedgenTAF5
Genetic Testing Registry TAF5
NextProtQ15542 [Medical]
TSGene6877
GENETestsTAF5
Target ValidationTAF5
Huge Navigator TAF5 [HugePedia]
snp3D : Map Gene to Disease6877
BioCentury BCIQTAF5
ClinGenTAF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6877
Chemical/Pharm GKB GenePA36314
Clinical trialTAF5
Miscellaneous
canSAR (ICR)TAF5 (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF5
EVEXTAF5
GoPubMedTAF5
iHOPTAF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:56 CEST 2017

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