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TAF5L (TATA-box binding protein associated factor 5 like)

Identity

Alias_namesTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65 kD
TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
Alias_symbol (synonym)PAF65B
Other alias
HGNC (Hugo) TAF5L
LocusID (NCBI) 27097
Atlas_Id 74471
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 229599194 and ends at 229626047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAF5L (1q42.13) / B4GALT5 (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF5L   17304
Cards
Entrez_Gene (NCBI)TAF5L  27097  TATA-box binding protein associated factor 5 like
AliasesPAF65B
GeneCards (Weizmann)TAF5L
Ensembl hg19 (Hinxton)ENSG00000135801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135801 [Gene_View]  chr1:229599194-229626047 [Contig_View]  TAF5L [Vega]
ICGC DataPortalENSG00000135801
TCGA cBioPortalTAF5L
AceView (NCBI)TAF5L
Genatlas (Paris)TAF5L
WikiGenes27097
SOURCE (Princeton)TAF5L
Genetics Home Reference (NIH)TAF5L
Genomic and cartography
GoldenPath hg38 (UCSC)TAF5L  -     chr1:229599194-229626047 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF5L  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblTAF5L - 1q42.13 [CytoView hg19]  TAF5L - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBITAF5L [Mapview hg19]  TAF5L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF069736 AI251746 AJ009770 BC001569 BC041094
RefSeq transcript (Entrez)NM_001025247 NM_014409
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF5L
Cluster EST : UnigeneHs.270621 [ NCBI ]
CGAP (NCI)Hs.270621
Alternative Splicing GalleryENSG00000135801
Gene ExpressionTAF5L [ NCBI-GEO ]   TAF5L [ EBI - ARRAY_EXPRESS ]   TAF5L [ SEEK ]   TAF5L [ MEM ]
Gene Expression Viewer (FireBrowse)TAF5L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27097
GTEX Portal (Tissue expression)TAF5L
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75529   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75529  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75529
Splice isoforms : SwissVarO75529
PhosPhoSitePlusO75529
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    TFIID_NTD2    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)TFIID_NTD2 (PF04494)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam04494    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)TAF5L
DMDM Disease mutations27097
Blocks (Seattle)TAF5L
SuperfamilyO75529
Human Protein AtlasENSG00000135801
Peptide AtlasO75529
HPRD11619
IPIIPI00004325   IPI00410088   IPI00514771   
Protein Interaction databases
DIP (DOE-UCLA)O75529
IntAct (EBI)O75529
FunCoupENSG00000135801
BioGRIDTAF5L
STRING (EMBL)TAF5L
ZODIACTAF5L
Ontologies - Pathways
QuickGOO75529
Ontology : AmiGOP-body  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  histone acetyltransferase activity  protein binding  nucleus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  nuclear speck  STAGA complex  transcription factor TFTC complex  histone H3 acetylation  
Ontology : EGO-EBIP-body  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  histone acetyltransferase activity  protein binding  nucleus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  nuclear speck  STAGA complex  transcription factor TFTC complex  histone H3 acetylation  
Pathways : KEGGBasal transcription factors    Herpes simplex infection   
NDEx NetworkTAF5L
Atlas of Cancer Signalling NetworkTAF5L
Wikipedia pathwaysTAF5L
Orthology - Evolution
OrthoDB27097
GeneTree (enSembl)ENSG00000135801
Phylogenetic Trees/Animal Genes : TreeFamTAF5L
HOVERGENO75529
HOGENOMO75529
Homologs : HomoloGeneTAF5L
Homology/Alignments : Family Browser (UCSC)TAF5L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF5L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF5L
dbVarTAF5L
ClinVarTAF5L
1000_GenomesTAF5L 
Exome Variant ServerTAF5L
ExAC (Exome Aggregation Consortium)TAF5L (select the gene name)
Genetic variants : HAPMAP27097
Genomic Variants (DGV)TAF5L [DGVbeta]
DECIPHERTAF5L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF5L 
Mutations
ICGC Data PortalTAF5L 
TCGA Data PortalTAF5L 
Broad Tumor PortalTAF5L
OASIS PortalTAF5L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF5L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF5L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF5L
DgiDB (Drug Gene Interaction Database)TAF5L
DoCM (Curated mutations)TAF5L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF5L (select a term)
intoGenTAF5L
Cancer3DTAF5L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTAF5L
Genetic Testing Registry TAF5L
NextProtO75529 [Medical]
TSGene27097
GENETestsTAF5L
Target ValidationTAF5L
Huge Navigator TAF5L [HugePedia]
snp3D : Map Gene to Disease27097
BioCentury BCIQTAF5L
ClinGenTAF5L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27097
Chemical/Pharm GKB GenePA38223
Clinical trialTAF5L
Miscellaneous
canSAR (ICR)TAF5L (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF5L
EVEXTAF5L
GoPubMedTAF5L
iHOPTAF5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:48 CEST 2017

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