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TAF5L (TATA-box binding protein associated factor 5 like)

Identity

Alias (NCBI)PAF65B
HGNC (Hugo) TAF5L
HGNC Alias symbPAF65B
HGNC Alias namePCAF associated factor 65 beta
HGNC Previous nameTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65 kD
 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
LocusID (NCBI) 27097
Atlas_Id 74471
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 229593118 and ends at 229626047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TAF5L (1q42.13) / B4GALT5 (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAF5L   17304
Cards
Entrez_Gene (NCBI)TAF5L    TATA-box binding protein associated factor 5 like
AliasesPAF65B
GeneCards (Weizmann)TAF5L
Ensembl hg19 (Hinxton)ENSG00000135801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135801 [Gene_View]  ENSG00000135801 [Sequence]  chr1:229593118-229626047 [Contig_View]  TAF5L [Vega]
ICGC DataPortalENSG00000135801
TCGA cBioPortalTAF5L
AceView (NCBI)TAF5L
Genatlas (Paris)TAF5L
SOURCE (Princeton)TAF5L
Genetics Home Reference (NIH)TAF5L
Genomic and cartography
GoldenPath hg38 (UCSC)TAF5L  -     chr1:229593118-229626047 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF5L  -     1q42.13   [Description]    (hg19-Feb_2009)
GoldenPathTAF5L - 1q42.13 [CytoView hg19]  TAF5L - 1q42.13 [CytoView hg38]
ImmunoBaseENSG00000135801
Genome Data Viewer NCBITAF5L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF069736 AI251746 AJ009770 BC001569 BC041094
RefSeq transcript (Entrez)NM_001025247 NM_014409
Consensus coding sequences : CCDS (NCBI)TAF5L
Gene ExpressionTAF5L [ NCBI-GEO ]   TAF5L [ EBI - ARRAY_EXPRESS ]   TAF5L [ SEEK ]   TAF5L [ MEM ]
Gene Expression Viewer (FireBrowse)TAF5L [ Firebrowse - Broad ]
GenevisibleExpression of TAF5L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27097
GTEX Portal (Tissue expression)TAF5L
Human Protein AtlasENSG00000135801-TAF5L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75529   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75529  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75529
PhosPhoSitePlusO75529
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    Taf5    TAF5L    TFIID_NTD2    TFIID_NTD2_sf    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)TFIID_NTD2 (PF04494)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam04494    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)TAF5L
SuperfamilyO75529
AlphaFold pdb e-kbO75529   
Human Protein Atlas [tissue]ENSG00000135801-TAF5L [tissue]
HPRD11619
Protein Interaction databases
DIP (DOE-UCLA)O75529
IntAct (EBI)O75529
BioGRIDTAF5L
STRING (EMBL)TAF5L
ZODIACTAF5L
Ontologies - Pathways
QuickGOO75529
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  transcription by RNA polymerase II  nuclear speck  STAGA complex  transcription factor TFTC complex  cytoplasmic ribonucleoprotein granule  histone H3 acetylation  histone H3 acetylation  positive regulation of transcription, DNA-templated  regulation of somatic stem cell population maintenance  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  transcription by RNA polymerase II  nuclear speck  STAGA complex  transcription factor TFTC complex  cytoplasmic ribonucleoprotein granule  histone H3 acetylation  histone H3 acetylation  positive regulation of transcription, DNA-templated  regulation of somatic stem cell population maintenance  
Pathways : KEGGBasal transcription factors   
NDEx NetworkTAF5L
Atlas of Cancer Signalling NetworkTAF5L
Wikipedia pathwaysTAF5L
Orthology - Evolution
OrthoDB27097
GeneTree (enSembl)ENSG00000135801
Phylogenetic Trees/Animal Genes : TreeFamTAF5L
Homologs : HomoloGeneTAF5L
Homology/Alignments : Family Browser (UCSC)TAF5L
Gene fusions - Rearrangements
Fusion : QuiverTAF5L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF5L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF5L
dbVarTAF5L
ClinVarTAF5L
MonarchTAF5L
1000_GenomesTAF5L 
Exome Variant ServerTAF5L
GNOMAD BrowserENSG00000135801
Varsome BrowserTAF5L
ACMGTAF5L variants
VarityO75529
Genomic Variants (DGV)TAF5L [DGVbeta]
DECIPHERTAF5L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF5L 
Mutations
ICGC Data PortalTAF5L 
TCGA Data PortalTAF5L 
Broad Tumor PortalTAF5L
OASIS PortalTAF5L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF5L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAF5L
Mutations and Diseases : HGMDTAF5L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAF5L
DgiDB (Drug Gene Interaction Database)TAF5L
DoCM (Curated mutations)TAF5L
CIViC (Clinical Interpretations of Variants in Cancer)TAF5L
Cancer3DTAF5L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTAF5L
MedgenTAF5L
Genetic Testing Registry TAF5L
NextProtO75529 [Medical]
GENETestsTAF5L
Target ValidationTAF5L
Huge Navigator TAF5L [HugePedia]
ClinGenTAF5L
Clinical trials, drugs, therapy
MyCancerGenomeTAF5L
Protein Interactions : CTDTAF5L
Pharm GKB GenePA38223
PharosO75529
Clinical trialTAF5L
Miscellaneous
canSAR (ICR)TAF5L
HarmonizomeTAF5L
DataMed IndexTAF5L
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAF5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:48 CEST 2021

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