Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAF6L (TATA-box binding protein associated factor 6 like)

Identity

Alias (NCBI)PAF65A
HGNC (Hugo) TAF6L
HGNC Alias symbPAF65A
HGNC Previous nameTAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65 kD
 TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
LocusID (NCBI) 10629
Atlas_Id 42464
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62771396 and ends at 62787341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TAF6L (11q12.3) / GLYATL1 (11q12.1)TAF6L (11q12.3) / PRKCI (3q26.2)TMEM179B (11q12.3) / TAF6L (11q12.3)
TAF6L 11q12.3 / GLYATL1 11q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAF6L   17305
Cards
Entrez_Gene (NCBI)TAF6L    TATA-box binding protein associated factor 6 like
AliasesPAF65A
GeneCards (Weizmann)TAF6L
Ensembl hg19 (Hinxton)ENSG00000162227 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162227 [Gene_View]  ENSG00000162227 [Sequence]  chr11:62771396-62787341 [Contig_View]  TAF6L [Vega]
ICGC DataPortalENSG00000162227
TCGA cBioPortalTAF6L
AceView (NCBI)TAF6L
Genatlas (Paris)TAF6L
SOURCE (Princeton)TAF6L
Genetics Home Reference (NIH)TAF6L
Genomic and cartography
GoldenPath hg38 (UCSC)TAF6L  -     chr11:62771396-62787341 +  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF6L  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathTAF6L - 11q12.3 [CytoView hg19]  TAF6L - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000162227
Genome Data Viewer NCBITAF6L [Mapview hg19]  
OMIM602946   
Gene and transcription
Genbank (Entrez)AF069735 AK289499 AK301145 AK310054 AK314330
RefSeq transcript (Entrez)NM_006473
Consensus coding sequences : CCDS (NCBI)TAF6L
Gene ExpressionTAF6L [ NCBI-GEO ]   TAF6L [ EBI - ARRAY_EXPRESS ]   TAF6L [ SEEK ]   TAF6L [ MEM ]
Gene Expression Viewer (FireBrowse)TAF6L [ Firebrowse - Broad ]
GenevisibleExpression of TAF6L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10629
GTEX Portal (Tissue expression)TAF6L
Human Protein AtlasENSG00000162227-TAF6L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6J9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6J9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6J9
PhosPhoSitePlusQ9Y6J9
Domains : Interpro (EBI)Histone-fold    TAF6    TAF6_C    TAF_TATA-bd   
Domain families : Pfam (Sanger)TAF (PF02969)    TAF6_C (PF07571)   
Domain families : Pfam (NCBI)pfam02969    pfam07571   
Domain families : Smart (EMBL)TAF (SM00803)  
Conserved Domain (NCBI)TAF6L
SuperfamilyQ9Y6J9
AlphaFold pdb e-kbQ9Y6J9   
Human Protein Atlas [tissue]ENSG00000162227-TAF6L [tissue]
HPRD04253
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6J9
IntAct (EBI)Q9Y6J9
BioGRIDTAF6L
STRING (EMBL)TAF6L
ZODIACTAF6L
Ontologies - Pathways
QuickGOQ9Y6J9
Ontology : AmiGOhistone deacetylase complex  SAGA complex  DNA binding  transcription coactivator activity  transcription coactivator activity  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  chromatin remodeling  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  RNA polymerase II general transcription initiation factor activity  histone acetylation  STAGA complex  STAGA complex  histone H3 acetylation  positive regulation of transcription by RNA polymerase II  SLIK (SAGA-like) complex  protein heterodimerization activity  extracellular exosome  regulation of somatic stem cell population maintenance  
Ontology : EGO-EBIhistone deacetylase complex  SAGA complex  DNA binding  transcription coactivator activity  transcription coactivator activity  protein binding  nucleus  nucleoplasm  transcription factor TFIID complex  chromatin remodeling  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  RNA polymerase II general transcription initiation factor activity  histone acetylation  STAGA complex  STAGA complex  histone H3 acetylation  positive regulation of transcription by RNA polymerase II  SLIK (SAGA-like) complex  protein heterodimerization activity  extracellular exosome  regulation of somatic stem cell population maintenance  
Pathways : KEGGBasal transcription factors    Herpes simplex infection   
NDEx NetworkTAF6L
Atlas of Cancer Signalling NetworkTAF6L
Wikipedia pathwaysTAF6L
Orthology - Evolution
OrthoDB10629
GeneTree (enSembl)ENSG00000162227
Phylogenetic Trees/Animal Genes : TreeFamTAF6L
Homologs : HomoloGeneTAF6L
Homology/Alignments : Family Browser (UCSC)TAF6L
Gene fusions - Rearrangements
Fusion : MitelmanTAF6L/GLYATL1 [11q12.3/11q12.1]  
Fusion : QuiverTAF6L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF6L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF6L
dbVarTAF6L
ClinVarTAF6L
MonarchTAF6L
1000_GenomesTAF6L 
Exome Variant ServerTAF6L
GNOMAD BrowserENSG00000162227
Varsome BrowserTAF6L
ACMGTAF6L variants
VarityQ9Y6J9
Genomic Variants (DGV)TAF6L [DGVbeta]
DECIPHERTAF6L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF6L 
Mutations
ICGC Data PortalTAF6L 
TCGA Data PortalTAF6L 
Broad Tumor PortalTAF6L
OASIS PortalTAF6L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF6L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAF6L
Mutations and Diseases : HGMDTAF6L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAF6L
DgiDB (Drug Gene Interaction Database)TAF6L
DoCM (Curated mutations)TAF6L
CIViC (Clinical Interpretations of Variants in Cancer)TAF6L
Cancer3DTAF6L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602946   
Orphanet
DisGeNETTAF6L
MedgenTAF6L
Genetic Testing Registry TAF6L
NextProtQ9Y6J9 [Medical]
GENETestsTAF6L
Target ValidationTAF6L
Huge Navigator TAF6L [HugePedia]
ClinGenTAF6L
Clinical trials, drugs, therapy
MyCancerGenomeTAF6L
Protein Interactions : CTDTAF6L
Pharm GKB GenePA38224
PharosQ9Y6J9
Clinical trialTAF6L
Miscellaneous
canSAR (ICR)TAF6L
HarmonizomeTAF6L
DataMed IndexTAF6L
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAF6L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:11 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.