| Nomenclature |
|---|
| HGNC (Hugo) | TAF7 11541 |
| Cards |
|---|
| Entrez_Gene (NCBI) | TAF7 6879 TATA-box binding protein associated factor 7 |
| Aliases | TAF2F; TAFII55 |
| GeneCards (Weizmann) | TAF7 |
| Ensembl hg19 (Hinxton) | ENSG00000178913 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000178913 [Gene_View] chr5:141318490-141320784 [Contig_View] TAF7 [Vega] |
| ICGC DataPortal | ENSG00000178913 |
| TCGA cBioPortal | TAF7 |
| AceView (NCBI) | TAF7 |
| Genatlas (Paris) | TAF7 |
| WikiGenes | 6879 |
| SOURCE (Princeton) | TAF7 |
| Genetics Home Reference (NIH) | TAF7 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | TAF7 - chr5:141318490-141320784 - 5q31.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | TAF7 - 5q31.3 [Description] (hg19-Feb_2009) |
| Ensembl | TAF7 - 5q31.3 [CytoView hg19] TAF7 - 5q31.3 [CytoView hg38] |
| Mapping of homologs : NCBI | TAF7 [Mapview hg19] TAF7 [Mapview hg38] |
| OMIM | 600573 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK314837 BC013397 BC022798 BC032737 DQ890889 |
| RefSeq transcript (Entrez) | NM_005642 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | TAF7 |
| Cluster EST : Unigene | Hs.438838 [ NCBI ] |
| CGAP (NCI) | Hs.438838 |
| Alternative Splicing Gallery | ENSG00000178913 |
| Gene Expression | TAF7 [ NCBI-GEO ] TAF7 [ EBI - ARRAY_EXPRESS ]
TAF7 [ SEEK ] TAF7 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | TAF7 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevisible | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 6879 |
| GTEX Portal (Tissue expression) | TAF7 |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q15545 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q15545 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q15545 |
| Splice isoforms : SwissVar | Q15545 |
| PhosPhoSitePlus | Q15545 |
| Domains : Interpro (EBI) | TAFII55_prot_cons_reg |
| Domain families : Pfam (Sanger) | TAFII55_N (PF04658) |
| Domain families : Pfam (NCBI) | pfam04658 |
| Domain families : Smart (EMBL) | TAFII55_N (SM01370) |
| Conserved Domain (NCBI) | TAF7 |
| DMDM Disease mutations | 6879 |
| Blocks (Seattle) | TAF7 |
| PDB (SRS) | 4RGW 5FUR |
| PDB (PDBSum) | 4RGW 5FUR |
| PDB (IMB) | 4RGW 5FUR |
| PDB (RSDB) | 4RGW 5FUR |
| Structural Biology KnowledgeBase | 4RGW 5FUR |
| SCOP (Structural Classification of Proteins) | 4RGW 5FUR |
| CATH (Classification of proteins structures) | 4RGW 5FUR |
| Superfamily | Q15545 |
| Human Protein Atlas | ENSG00000178913 |
| Peptide Atlas | Q15545 |
| HPRD | 07196 |
| IPI | IPI00018111 IPI00815699 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q15545 |
| IntAct (EBI) | Q15545 |
| FunCoup | ENSG00000178913 |
| BioGRID | TAF7 |
| STRING (EMBL) | TAF7 |
| ZODIAC | TAF7 |
| Ontologies - Pathways |
|---|
| QuickGO | Q15545 |
| Ontology : AmiGO | negative regulation of transcription from RNA polymerase II promoter spermine transport transcription factor activity, sequence-specific DNA binding transcription coactivator activity protein binding nucleoplasm nucleoplasm transcription factor complex transcription factor TFIID complex Golgi apparatus DNA-templated transcription, initiation transcription from RNA polymerase II promoter transcription from RNA polymerase II promoter transcription initiation from RNA polymerase II promoter transcription initiation from RNA polymerase II promoter transcription elongation from RNA polymerase II promoter negative regulation of protein kinase activity cyclin/CDK positive transcription elongation factor complex transcription factor binding intracellular estrogen receptor signaling pathway transcription factor TFTC complex histone acetyltransferase binding negative regulation of histone acetylation vitamin D receptor binding transcription regulatory region DNA binding negative regulation of transcription, DNA-templated positive regulation of transcription from RNA polymerase II promoter thyroid hormone receptor binding protein heterodimerization activity RNA polymerase II transcriptional preinitiation complex assembly regulation of transcription initiation from RNA polymerase II promoter H3K27me3 modified histone binding MLL1 complex regulation of signal transduction by p53 class mediator |
| Ontology : EGO-EBI | negative regulation of transcription from RNA polymerase II promoter spermine transport transcription factor activity, sequence-specific DNA binding transcription coactivator activity protein binding nucleoplasm nucleoplasm transcription factor complex transcription factor TFIID complex Golgi apparatus DNA-templated transcription, initiation transcription from RNA polymerase II promoter transcription from RNA polymerase II promoter transcription initiation from RNA polymerase II promoter transcription initiation from RNA polymerase II promoter transcription elongation from RNA polymerase II promoter negative regulation of protein kinase activity cyclin/CDK positive transcription elongation factor complex transcription factor binding intracellular estrogen receptor signaling pathway transcription factor TFTC complex histone acetyltransferase binding negative regulation of histone acetylation vitamin D receptor binding transcription regulatory region DNA binding negative regulation of transcription, DNA-templated positive regulation of transcription from RNA polymerase II promoter thyroid hormone receptor binding protein heterodimerization activity RNA polymerase II transcriptional preinitiation complex assembly regulation of transcription initiation from RNA polymerase II promoter H3K27me3 modified histone binding MLL1 complex regulation of signal transduction by p53 class mediator |
| Pathways : KEGG | Basal transcription factors |
| NDEx Network | TAF7 |
| Atlas of Cancer Signalling Network | TAF7 |
| Wikipedia pathways | TAF7 |
| Orthology - Evolution |
|---|
| OrthoDB | 6879 |
| GeneTree (enSembl) | ENSG00000178913 |
| Phylogenetic Trees/Animal Genes : TreeFam | TAF7 |
| HOVERGEN | Q15545 |
| HOGENOM | Q15545 |
| Homologs : HomoloGene | TAF7 |
| Homology/Alignments : Family Browser (UCSC) | TAF7 |
| Gene fusions - Rearrangements |
|---|
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | TAF7 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | TAF7 |
| dbVar | TAF7 |
| ClinVar | TAF7 |
| 1000_Genomes | TAF7 |
| Exome Variant Server | TAF7 |
| ExAC (Exome Aggregation Consortium) | TAF7 (select the gene name) |
| Genetic variants : HAPMAP | 6879 |
| Genomic Variants (DGV) | TAF7 [DGVbeta] |
| DECIPHER | TAF7 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | TAF7 |
| Mutations |
|---|
| ICGC Data Portal | TAF7 |
| TCGA Data Portal | TAF7 |
| Broad Tumor Portal | TAF7 |
| OASIS Portal | TAF7 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | TAF7 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | TAF7 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search TAF7 |
| DgiDB (Drug Gene Interaction Database) | TAF7 |
| DoCM (Curated mutations) | TAF7 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | TAF7 (select a term) |
| intoGen | TAF7 |
| Cancer3D | TAF7(select the gene name) |
| Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 600573 |
| Orphanet | |
| Medgen | TAF7 |
| Genetic Testing Registry | TAF7
|
| NextProt | Q15545 [Medical] |
| TSGene | 6879 |
| GENETests | TAF7 |
| Target Validation | TAF7 |
| Huge Navigator |
TAF7 [HugePedia] |
| snp3D : Map Gene to Disease | 6879 |
| BioCentury BCIQ | TAF7 |
| ClinGen | TAF7 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 6879 |
| Chemical/Pharm GKB Gene | PA36316 |
| Clinical trial | TAF7 |
| Miscellaneous |
|---|
| canSAR (ICR) | TAF7 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 64 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | TAF7 |
| EVEX | TAF7 |
| GoPubMed | TAF7 |
| iHOP | TAF7 |
