Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TAF9 (TATA-box binding protein associated factor 9)

Identity

Alias (NCBI)MGC:5067
STAF31/32
TAF2G
TAFII-31
TAFII-32
TAFII31
TAFII32
TAFIID32
HGNC (Hugo) TAF9
HGNC Alias symbTAFII31
TAFII32
TAFIID32
MGC5067
CGI-137
MGC1603
MGC3647
AD-004
HGNC Previous nameTAF2G
HGNC Previous nameTATA box binding protein (TBP)-associated factor, RNA polymerase II, G, 32kD
 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
LocusID (NCBI) 6880
Atlas_Id 42466
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69364743 and ends at 69369520 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAF9   11542
Cards
Entrez_Gene (NCBI)TAF9    TATA-box binding protein associated factor 9
AliasesMGC:5067; STAF31/32; TAF2G; TAFII-31; 
TAFII-32; TAFII31; TAFII32; TAFIID32
GeneCards (Weizmann)TAF9
Ensembl hg19 (Hinxton)ENSG00000273841 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273841 [Gene_View]  ENSG00000273841 [Sequence]  chr5:69364743-69369520 [Contig_View]  TAF9 [Vega]
ICGC DataPortalENSG00000273841
TCGA cBioPortalTAF9
AceView (NCBI)TAF9
Genatlas (Paris)TAF9
SOURCE (Princeton)TAF9
Genetics Home Reference (NIH)TAF9
Genomic and cartography
GoldenPath hg38 (UCSC)TAF9  -     chr5:69364743-69369520 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF9  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTAF9 - 5q13.2 [CytoView hg19]  TAF9 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000273841
Genome Data Viewer NCBITAF9 [Mapview hg19]  
OMIM600822   
Gene and transcription
Genbank (Entrez)AI879232 BC003400 BC007349 BC033320 BG490028
RefSeq transcript (Entrez)NM_001015892 NM_003187
Consensus coding sequences : CCDS (NCBI)TAF9
Gene ExpressionTAF9 [ NCBI-GEO ]   TAF9 [ EBI - ARRAY_EXPRESS ]   TAF9 [ SEEK ]   TAF9 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF9 [ Firebrowse - Broad ]
GenevisibleExpression of TAF9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6880
GTEX Portal (Tissue expression)TAF9
Human Protein AtlasENSG00000273841-TAF9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16594   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16594  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16594
PhosPhoSitePlusQ16594
Domains : Interpro (EBI)Histone-fold    TFIID-31   
Domain families : Pfam (Sanger)TFIID-31kDa (PF02291)   
Domain families : Pfam (NCBI)pfam02291   
Conserved Domain (NCBI)TAF9
PDB (RSDB)6F3T    6MZC    6MZD    6MZL    6MZM   
PDB Europe6F3T    6MZC    6MZD    6MZL    6MZM   
PDB (PDBSum)6F3T    6MZC    6MZD    6MZL    6MZM   
PDB (IMB)6F3T    6MZC    6MZD    6MZL    6MZM   
Structural Biology KnowledgeBase6F3T    6MZC    6MZD    6MZL    6MZM   
SCOP (Structural Classification of Proteins)6F3T    6MZC    6MZD    6MZL    6MZM   
CATH (Classification of proteins structures)6F3T    6MZC    6MZD    6MZL    6MZM   
SuperfamilyQ16594
AlphaFold pdb e-kbQ16594   
Human Protein Atlas [tissue]ENSG00000273841-TAF9 [tissue]
HPRD15983
Protein Interaction databases
DIP (DOE-UCLA)Q16594
IntAct (EBI)Q16594
BioGRIDTAF9
STRING (EMBL)TAF9
ZODIACTAF9
Ontologies - Pathways
QuickGOQ16594
Ontology : AmiGOSAGA complex  PCAF complex  box C/D snoRNP assembly  transcription cis-regulatory region binding  p53 binding  DNA binding  transcription coactivator activity  transcription coactivator activity  transcription coactivator activity  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  cellular response to DNA damage stimulus  RNA polymerase II general transcription initiation factor activity  RNA polymerase II general transcription initiation factor activity  STAGA complex  negative regulation of proteasomal ubiquitin-dependent protein catabolic process  transcription factor TFTC complex  transcription factor TFTC complex  snRNA transcription by RNA polymerase II  negative regulation of apoptotic process  histone H3 acetylation  histone H3 acetylation  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  protein heterodimerization activity  protein stabilization  ATPase binding  positive regulation of response to cytokine stimulus  response to interleukin-1  C2H2 zinc finger domain binding  pre-snoRNP complex  MLL1 complex  DNA-binding transcription factor binding  regulation of signal transduction by p53 class mediator  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Ontology : EGO-EBISAGA complex  PCAF complex  box C/D snoRNP assembly  transcription cis-regulatory region binding  p53 binding  DNA binding  transcription coactivator activity  transcription coactivator activity  transcription coactivator activity  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  cellular response to DNA damage stimulus  RNA polymerase II general transcription initiation factor activity  RNA polymerase II general transcription initiation factor activity  STAGA complex  negative regulation of proteasomal ubiquitin-dependent protein catabolic process  transcription factor TFTC complex  transcription factor TFTC complex  snRNA transcription by RNA polymerase II  negative regulation of apoptotic process  histone H3 acetylation  histone H3 acetylation  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  protein heterodimerization activity  protein stabilization  ATPase binding  positive regulation of response to cytokine stimulus  response to interleukin-1  C2H2 zinc finger domain binding  pre-snoRNP complex  MLL1 complex  DNA-binding transcription factor binding  regulation of signal transduction by p53 class mediator  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Pathways : KEGGRibosome biogenesis in eukaryotes    Basal transcription factors   
NDEx NetworkTAF9
Atlas of Cancer Signalling NetworkTAF9
Wikipedia pathwaysTAF9
Orthology - Evolution
OrthoDB6880
GeneTree (enSembl)ENSG00000273841
Phylogenetic Trees/Animal Genes : TreeFamTAF9
Homologs : HomoloGeneTAF9
Homology/Alignments : Family Browser (UCSC)TAF9
Gene fusions - Rearrangements
Fusion : QuiverTAF9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF9
dbVarTAF9
ClinVarTAF9
MonarchTAF9
1000_GenomesTAF9 
Exome Variant ServerTAF9
GNOMAD BrowserENSG00000273841
Varsome BrowserTAF9
ACMGTAF9 variants
VarityQ16594
Genomic Variants (DGV)TAF9 [DGVbeta]
DECIPHERTAF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF9 
Mutations
ICGC Data PortalTAF9 
TCGA Data PortalTAF9 
Broad Tumor PortalTAF9
OASIS PortalTAF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAF9
Mutations and Diseases : HGMDTAF9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAF9
DgiDB (Drug Gene Interaction Database)TAF9
DoCM (Curated mutations)TAF9
CIViC (Clinical Interpretations of Variants in Cancer)TAF9
Cancer3DTAF9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600822   
Orphanet
DisGeNETTAF9
MedgenTAF9
Genetic Testing Registry TAF9
NextProtQ16594 [Medical]
GENETestsTAF9
Target ValidationTAF9
Huge Navigator TAF9 [HugePedia]
ClinGenTAF9
Clinical trials, drugs, therapy
MyCancerGenomeTAF9
Protein Interactions : CTDTAF9
Pharm GKB GenePA36317
PharosQ16594
Clinical trialTAF9
Miscellaneous
canSAR (ICR)TAF9
HarmonizomeTAF9
DataMed IndexTAF9
Probes
Litterature
PubMed106 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:11 CEST 2021

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