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TAF9 (TATA-box binding protein associated factor 9)

Identity

Alias_namesTAF2G
TATA box binding protein (TBP)-associated factor, RNA polymerase II, G, 32kD
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
Alias_symbol (synonym)TAFII31
TAFII32
TAFIID32
MGC5067
CGI-137
MGC1603
MGC3647
AD-004
Other aliasMGC:5067
STAF31/32
TAFII-31
TAFII-32
HGNC (Hugo) TAF9
LocusID (NCBI) 6880
Atlas_Id 42466
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69364743 and ends at 69370013 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF9   11542
Cards
Entrez_Gene (NCBI)TAF9  6880  TATA-box binding protein associated factor 9
AliasesMGC:5067; STAF31/32; TAF2G; TAFII-31; 
TAFII-32; TAFII31; TAFII32; TAFIID32
GeneCards (Weizmann)TAF9
Ensembl hg19 (Hinxton)ENSG00000085231 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085231 [Gene_View]  chr5:69364743-69370013 [Contig_View]  TAF9 [Vega]
ICGC DataPortalENSG00000085231
TCGA cBioPortalTAF9
AceView (NCBI)TAF9
Genatlas (Paris)TAF9
WikiGenes6880
SOURCE (Princeton)TAF9
Genetics Home Reference (NIH)TAF9
Genomic and cartography
GoldenPath hg38 (UCSC)TAF9  -     chr5:69364743-69370013 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF9  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblTAF9 - 5q13.2 [CytoView hg19]  TAF9 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBITAF9 [Mapview hg19]  TAF9 [Mapview hg38]
OMIM600822   
Gene and transcription
Genbank (Entrez)AI879232 BC003400 BC007349 BC033320 BG490028
RefSeq transcript (Entrez)NM_001015892 NM_003187
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAF9
Cluster EST : UnigeneHs.653163 [ NCBI ]
CGAP (NCI)Hs.653163
Alternative Splicing GalleryENSG00000085231
Gene ExpressionTAF9 [ NCBI-GEO ]   TAF9 [ EBI - ARRAY_EXPRESS ]   TAF9 [ SEEK ]   TAF9 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6880
GTEX Portal (Tissue expression)TAF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16594   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16594  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16594
Splice isoforms : SwissVarQ16594
PhosPhoSitePlusQ16594
Domains : Interpro (EBI)Histone-fold    TFIID-31   
Domain families : Pfam (Sanger)TFIID-31kDa (PF02291)   
Domain families : Pfam (NCBI)pfam02291   
Conserved Domain (NCBI)TAF9
DMDM Disease mutations6880
Blocks (Seattle)TAF9
SuperfamilyQ16594
Human Protein AtlasENSG00000085231
Peptide AtlasQ16594
HPRD15983
IPIIPI00002993   IPI00032879   IPI00556532   IPI00966393   IPI00967333   IPI00967629   IPI00968119   IPI00967834   IPI00966875   
Protein Interaction databases
DIP (DOE-UCLA)Q16594
IntAct (EBI)Q16594
FunCoupENSG00000085231
BioGRIDTAF9
STRING (EMBL)TAF9
ZODIACTAF9
Ontologies - Pathways
QuickGOQ16594
Ontology : AmiGOSAGA complex  PCAF complex  box C/D snoRNP assembly  transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly  p53 binding  DNA binding  transcription coactivator activity  transcription coactivator activity  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription factor TFIID complex  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  cellular response to DNA damage stimulus  positive regulation of cell growth  STAGA complex  negative regulation of proteasomal ubiquitin-dependent protein catabolic process  transcription factor TFTC complex  activating transcription factor binding  snRNA transcription from RNA polymerase II promoter  negative regulation of apoptotic process  histone H3 acetylation  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  protein stabilization  ATPase binding  RNA polymerase II transcriptional preinitiation complex assembly  positive regulation of response to cytokine stimulus  response to interleukin-1  C2H2 zinc finger domain binding  pre-snoRNP complex  MLL1 complex  regulation of signal transduction by p53 class mediator  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Ontology : EGO-EBISAGA complex  PCAF complex  box C/D snoRNP assembly  transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly  p53 binding  DNA binding  transcription coactivator activity  transcription coactivator activity  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription factor TFIID complex  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  cellular response to DNA damage stimulus  positive regulation of cell growth  STAGA complex  negative regulation of proteasomal ubiquitin-dependent protein catabolic process  transcription factor TFTC complex  activating transcription factor binding  snRNA transcription from RNA polymerase II promoter  negative regulation of apoptotic process  histone H3 acetylation  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  protein stabilization  ATPase binding  RNA polymerase II transcriptional preinitiation complex assembly  positive regulation of response to cytokine stimulus  response to interleukin-1  C2H2 zinc finger domain binding  pre-snoRNP complex  MLL1 complex  regulation of signal transduction by p53 class mediator  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Pathways : KEGGRibosome biogenesis in eukaryotes    Basal transcription factors   
NDEx NetworkTAF9
Atlas of Cancer Signalling NetworkTAF9
Wikipedia pathwaysTAF9
Orthology - Evolution
OrthoDB6880
GeneTree (enSembl)ENSG00000085231
Phylogenetic Trees/Animal Genes : TreeFamTAF9
HOVERGENQ16594
HOGENOMQ16594
Homologs : HomoloGeneTAF9
Homology/Alignments : Family Browser (UCSC)TAF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF9
dbVarTAF9
ClinVarTAF9
1000_GenomesTAF9 
Exome Variant ServerTAF9
ExAC (Exome Aggregation Consortium)TAF9 (select the gene name)
Genetic variants : HAPMAP6880
Genomic Variants (DGV)TAF9 [DGVbeta]
DECIPHERTAF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF9 
Mutations
ICGC Data PortalTAF9 
TCGA Data PortalTAF9 
Broad Tumor PortalTAF9
OASIS PortalTAF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAF9
DgiDB (Drug Gene Interaction Database)TAF9
DoCM (Curated mutations)TAF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF9 (select a term)
intoGenTAF9
Cancer3DTAF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600822   
Orphanet
MedgenTAF9
Genetic Testing Registry TAF9
NextProtQ16594 [Medical]
TSGene6880
GENETestsTAF9
Huge Navigator TAF9 [HugePedia]
snp3D : Map Gene to Disease6880
BioCentury BCIQTAF9
ClinGenTAF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6880
Chemical/Pharm GKB GenePA36317
Clinical trialTAF9
Miscellaneous
canSAR (ICR)TAF9 (select the gene name)
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF9
EVEXTAF9
GoPubMedTAF9
iHOPTAF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:10 CEST 2017

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