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TAF9B (TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa)

Identity

Alias_namesTAF9L
TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
Alias_symbol (synonym)TAFII31L
DN-7
DN7
TFIID-31
Other alias
HGNC (Hugo) TAF9B
LocusID (NCBI) 51616
Atlas_Id 74473
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 77385245 and ends at 77395179 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAF9B   17306
Cards
Entrez_Gene (NCBI)TAF9B  51616  TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
AliasesDN-7; DN7; TAF9L; TAFII31L; 
TFIID-31
GeneCards (Weizmann)TAF9B
Ensembl hg19 (Hinxton)ENSG00000187325 [Gene_View]  chrX:77385245-77395179 [Contig_View]  TAF9B [Vega]
Ensembl hg38 (Hinxton)ENSG00000187325 [Gene_View]  chrX:77385245-77395179 [Contig_View]  TAF9B [Vega]
ICGC DataPortalENSG00000187325
TCGA cBioPortalTAF9B
AceView (NCBI)TAF9B
Genatlas (Paris)TAF9B
WikiGenes51616
SOURCE (Princeton)TAF9B
Genetics Home Reference (NIH)TAF9B
Genomic and cartography
GoldenPath hg19 (UCSC)TAF9B  -     chrX:77385245-77395179 -  Xq21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TAF9B  -     Xq21.1   [Description]    (hg38-Dec_2013)
EnsemblTAF9B - Xq21.1 [CytoView hg19]  TAF9B - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBITAF9B [Mapview hg19]  TAF9B [Mapview hg38]
OMIM300754   
Gene and transcription
Genbank (Entrez)AF220509 AK074449 AK312579 BC009566 BC010350
RefSeq transcript (Entrez)NM_015975
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012570 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)TAF9B
Cluster EST : UnigeneHs.592248 [ NCBI ]
CGAP (NCI)Hs.592248
Alternative Splicing GalleryENSG00000187325
Gene ExpressionTAF9B [ NCBI-GEO ]   TAF9B [ EBI - ARRAY_EXPRESS ]   TAF9B [ SEEK ]   TAF9B [ MEM ]
Gene Expression Viewer (FireBrowse)TAF9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51616
GTEX Portal (Tissue expression)TAF9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBM6
Splice isoforms : SwissVarQ9HBM6
PhosPhoSitePlusQ9HBM6
Domains : Interpro (EBI)Histone-fold    TFIID-31   
Domain families : Pfam (Sanger)TFIID-31kDa (PF02291)   
Domain families : Pfam (NCBI)pfam02291   
Conserved Domain (NCBI)TAF9B
DMDM Disease mutations51616
Blocks (Seattle)TAF9B
SuperfamilyQ9HBM6
Human Protein AtlasENSG00000187325
Peptide AtlasQ9HBM6
HPRD06739
IPIIPI00642105   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBM6
IntAct (EBI)Q9HBM6
FunCoupENSG00000187325
BioGRIDTAF9B
STRING (EMBL)TAF9B
ZODIACTAF9B
Ontologies - Pathways
QuickGOQ9HBM6
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription corepressor activity  protein binding  nucleoplasm  transcription factor TFIID complex  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  gene expression  viral process  positive regulation of cell growth  transcription factor TFTC complex  negative regulation of apoptotic process  protein heterodimerization activity  protein stabilization  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription corepressor activity  protein binding  nucleoplasm  transcription factor TFIID complex  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  gene expression  viral process  positive regulation of cell growth  transcription factor TFTC complex  negative regulation of apoptotic process  protein heterodimerization activity  protein stabilization  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Pathways : KEGGBasal transcription factors    Herpes simplex infection   
NDEx NetworkTAF9B
Atlas of Cancer Signalling NetworkTAF9B
Wikipedia pathwaysTAF9B
Orthology - Evolution
OrthoDB51616
GeneTree (enSembl)ENSG00000187325
Phylogenetic Trees/Animal Genes : TreeFamTAF9B
HOVERGENQ9HBM6
HOGENOMQ9HBM6
Homologs : HomoloGeneTAF9B
Homology/Alignments : Family Browser (UCSC)TAF9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF9B
dbVarTAF9B
ClinVarTAF9B
1000_GenomesTAF9B 
Exome Variant ServerTAF9B
ExAC (Exome Aggregation Consortium)TAF9B (select the gene name)
Genetic variants : HAPMAP51616
Genomic Variants (DGV)TAF9B [DGVbeta]
DECIPHER (Syndromes)X:77385245-77395179  ENSG00000187325
CONAN: Copy Number AnalysisTAF9B 
Mutations
ICGC Data PortalTAF9B 
TCGA Data PortalTAF9B 
Broad Tumor PortalTAF9B
OASIS PortalTAF9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAF9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TAF9B
DgiDB (Drug Gene Interaction Database)TAF9B
DoCM (Curated mutations)TAF9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAF9B (select a term)
intoGenTAF9B
Cancer3DTAF9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300754   
Orphanet
MedgenTAF9B
Genetic Testing Registry TAF9B
NextProtQ9HBM6 [Medical]
TSGene51616
GENETestsTAF9B
Huge Navigator TAF9B [HugePedia]
snp3D : Map Gene to Disease51616
BioCentury BCIQTAF9B
ClinGenTAF9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51616
Chemical/Pharm GKB GenePA38225
Clinical trialTAF9B
Miscellaneous
canSAR (ICR)TAF9B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAF9B
EVEXTAF9B
GoPubMedTAF9B
iHOPTAF9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:22 CET 2017

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