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TAF9B (TATA-box binding protein associated factor 9b)

Identity

Alias (NCBI)DN-7
DN7
TAF9L
TAFII31L
TFIID-31
HGNC (Hugo) TAF9B
HGNC Alias symbTAFII31L
DN-7
DN7
TFIID-31
HGNC Previous nameTAF9L
HGNC Previous nameTAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
LocusID (NCBI) 51616
Atlas_Id 74473
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 78129748 and ends at 78139650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAF9B   17306
Cards
Entrez_Gene (NCBI)TAF9B    TATA-box binding protein associated factor 9b
AliasesDN-7; DN7; TAF9L; TAFII31L; 
TFIID-31
GeneCards (Weizmann)TAF9B
Ensembl hg19 (Hinxton)ENSG00000187325 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187325 [Gene_View]  ENSG00000187325 [Sequence]  chrX:78129748-78139650 [Contig_View]  TAF9B [Vega]
ICGC DataPortalENSG00000187325
TCGA cBioPortalTAF9B
AceView (NCBI)TAF9B
Genatlas (Paris)TAF9B
SOURCE (Princeton)TAF9B
Genetics Home Reference (NIH)TAF9B
Genomic and cartography
GoldenPath hg38 (UCSC)TAF9B  -     chrX:78129748-78139650 -  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF9B  -     Xq21.1   [Description]    (hg19-Feb_2009)
GoldenPathTAF9B - Xq21.1 [CytoView hg19]  TAF9B - Xq21.1 [CytoView hg38]
ImmunoBaseENSG00000187325
Genome Data Viewer NCBITAF9B [Mapview hg19]  
OMIM300754   
Gene and transcription
Genbank (Entrez)AF220509 AK074449 AK312579 BC009566 BC010350
RefSeq transcript (Entrez)NM_015975
Consensus coding sequences : CCDS (NCBI)TAF9B
Gene ExpressionTAF9B [ NCBI-GEO ]   TAF9B [ EBI - ARRAY_EXPRESS ]   TAF9B [ SEEK ]   TAF9B [ MEM ]
Gene Expression Viewer (FireBrowse)TAF9B [ Firebrowse - Broad ]
GenevisibleExpression of TAF9B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51616
GTEX Portal (Tissue expression)TAF9B
Human Protein AtlasENSG00000187325-TAF9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBM6
PhosPhoSitePlusQ9HBM6
Domains : Interpro (EBI)Histone-fold    TFIID-31   
Domain families : Pfam (Sanger)TFIID-31kDa (PF02291)   
Domain families : Pfam (NCBI)pfam02291   
Conserved Domain (NCBI)TAF9B
SuperfamilyQ9HBM6
AlphaFold pdb e-kbQ9HBM6   
Human Protein Atlas [tissue]ENSG00000187325-TAF9B [tissue]
HPRD06739
Protein Interaction databases
DIP (DOE-UCLA)Q9HBM6
IntAct (EBI)Q9HBM6
BioGRIDTAF9B
STRING (EMBL)TAF9B
ZODIACTAF9B
Ontologies - Pathways
QuickGOQ9HBM6
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  transcription corepressor activity  protein binding  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  RNA polymerase II general transcription initiation factor activity  RNA polymerase II general transcription initiation factor activity  protein deubiquitination  positive regulation of cell growth  transcription factor TFTC complex  negative regulation of apoptotic process  protein heterodimerization activity  protein stabilization  regulation of signal transduction by p53 class mediator  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  transcription corepressor activity  protein binding  nucleoplasm  transcription factor TFIID complex  transcription factor TFIID complex  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  RNA polymerase II general transcription initiation factor activity  RNA polymerase II general transcription initiation factor activity  protein deubiquitination  positive regulation of cell growth  transcription factor TFTC complex  negative regulation of apoptotic process  protein heterodimerization activity  protein stabilization  regulation of signal transduction by p53 class mediator  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Pathways : KEGGBasal transcription factors   
NDEx NetworkTAF9B
Atlas of Cancer Signalling NetworkTAF9B
Wikipedia pathwaysTAF9B
Orthology - Evolution
OrthoDB51616
GeneTree (enSembl)ENSG00000187325
Phylogenetic Trees/Animal Genes : TreeFamTAF9B
Homologs : HomoloGeneTAF9B
Homology/Alignments : Family Browser (UCSC)TAF9B
Gene fusions - Rearrangements
Fusion : QuiverTAF9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAF9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAF9B
dbVarTAF9B
ClinVarTAF9B
MonarchTAF9B
1000_GenomesTAF9B 
Exome Variant ServerTAF9B
GNOMAD BrowserENSG00000187325
Varsome BrowserTAF9B
ACMGTAF9B variants
VarityQ9HBM6
Genomic Variants (DGV)TAF9B [DGVbeta]
DECIPHERTAF9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAF9B 
Mutations
ICGC Data PortalTAF9B 
TCGA Data PortalTAF9B 
Broad Tumor PortalTAF9B
OASIS PortalTAF9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAF9B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAF9B
Mutations and Diseases : HGMDTAF9B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAF9B
DgiDB (Drug Gene Interaction Database)TAF9B
DoCM (Curated mutations)TAF9B
CIViC (Clinical Interpretations of Variants in Cancer)TAF9B
Cancer3DTAF9B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300754   
Orphanet
DisGeNETTAF9B
MedgenTAF9B
Genetic Testing Registry TAF9B
NextProtQ9HBM6 [Medical]
GENETestsTAF9B
Target ValidationTAF9B
Huge Navigator TAF9B [HugePedia]
ClinGenTAF9B
Clinical trials, drugs, therapy
MyCancerGenomeTAF9B
Protein Interactions : CTDTAF9B
Pharm GKB GenePA38225
PharosQ9HBM6
Clinical trialTAF9B
Miscellaneous
canSAR (ICR)TAF9B
HarmonizomeTAF9B
DataMed IndexTAF9B
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAF9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:48 CEST 2021

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