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TAFA1 (TAFA chemokine like family member 1)

Identity

Alias_namesFAM19A1
family with sequence similarity 19 member A1, C-C motif chemokine like
Alias_symbol (synonym)TAFA-1
Other alias
HGNC (Hugo) TAFA1
LocusID (NCBI) 407738
Atlas_Id 54305
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 68004216 and ends at 68545620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC25A26 3p14.1 / FAM19A1 3p14.1
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0303p14p14ID105763 TT_t0305p14q15ID106116


External links

Nomenclature
HGNC (Hugo)TAFA1   21587
Cards
Entrez_Gene (NCBI)TAFA1  407738  TAFA chemokine like family member 1
AliasesFAM19A1; TAFA-1
GeneCards (Weizmann)TAFA1
Ensembl hg19 (Hinxton)ENSG00000183662 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183662 [Gene_View]  ENSG00000183662 [Sequence]  chr3:68004216-68545620 [Contig_View]  TAFA1 [Vega]
ICGC DataPortalENSG00000183662
TCGA cBioPortalTAFA1
AceView (NCBI)TAFA1
Genatlas (Paris)TAFA1
WikiGenes407738
SOURCE (Princeton)TAFA1
Genetics Home Reference (NIH)TAFA1
Genomic and cartography
GoldenPath hg38 (UCSC)TAFA1  -     chr3:68004216-68545620 +  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAFA1  -     -   [Description]    (hg19-Feb_2009)
GoldenPathTAFA1 - - [CytoView hg19]  TAFA1 - - [CytoView hg38]
ImmunoBaseENSG00000183662
Mapping of homologs : NCBITAFA1 [Mapview hg19]  TAFA1 [Mapview hg38]
OMIM617495   
Gene and transcription
Genbank (Entrez)AK289668 AK290446 AL713702 AY325114 BC025746
RefSeq transcript (Entrez)NM_001252216 NM_213609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAFA1
Cluster EST : UnigeneHs.731727 [ NCBI ]
CGAP (NCI)Hs.731727
Alternative Splicing GalleryENSG00000183662
Gene ExpressionTAFA1 [ NCBI-GEO ]   TAFA1 [ EBI - ARRAY_EXPRESS ]   TAFA1 [ SEEK ]   TAFA1 [ MEM ]
Gene Expression Viewer (FireBrowse)TAFA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)407738
GTEX Portal (Tissue expression)TAFA1
Human Protein AtlasENSG00000183662-TAFA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5A9
Splice isoforms : SwissVarQ7Z5A9
PhosPhoSitePlusQ7Z5A9
Domains : Interpro (EBI)Chemokine-like_FAM19A2   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Domain structure : Prodom (Prabi Lyon)Chemokine-like_2FAM19A2 (PD298472)   
Conserved Domain (NCBI)TAFA1
DMDM Disease mutations407738
Blocks (Seattle)TAFA1
SuperfamilyQ7Z5A9
Human Protein Atlas [tissue]ENSG00000183662-TAFA1 [tissue]
Peptide AtlasQ7Z5A9
HPRD13294
IPIIPI00456604   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5A9
IntAct (EBI)Q7Z5A9
FunCoupENSG00000183662
BioGRIDTAFA1
STRING (EMBL)TAFA1
ZODIACTAFA1
Ontologies - Pathways
QuickGOQ7Z5A9
Ontology : AmiGOprotein binding  extracellular space  extracellular space  endoplasmic reticulum  signal transduction  regulation of signaling receptor activity  neuroblast differentiation  neuroblast differentiation  receptor ligand activity  receptor ligand activity  regulation of neuroblast proliferation  regulation of neuroblast proliferation  
Ontology : EGO-EBIprotein binding  extracellular space  extracellular space  endoplasmic reticulum  signal transduction  regulation of signaling receptor activity  neuroblast differentiation  neuroblast differentiation  receptor ligand activity  receptor ligand activity  regulation of neuroblast proliferation  regulation of neuroblast proliferation  
NDEx NetworkTAFA1
Atlas of Cancer Signalling NetworkTAFA1
Wikipedia pathwaysTAFA1
Orthology - Evolution
OrthoDB407738
GeneTree (enSembl)ENSG00000183662
Phylogenetic Trees/Animal Genes : TreeFamTAFA1
HOGENOMQ7Z5A9
Homologs : HomoloGeneTAFA1
Homology/Alignments : Family Browser (UCSC)TAFA1
Gene fusions - Rearrangements
Fusion : MitelmanCAST/FAM19A1 [5q15/3p14.1]  [t(3;5)(p14;q15)]  
Fusion : MitelmanSLC25A26/FAM19A1 [3p14.1/3p14.1]  [t(3;3)(p14;p14)]  
Fusion PortalSLC25A26 3p14.1 FAM19A1 3p14.1 KIRC
Fusion : QuiverTAFA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAFA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAFA1
dbVarTAFA1
ClinVarTAFA1
1000_GenomesTAFA1 
Exome Variant ServerTAFA1
ExAC (Exome Aggregation Consortium)ENSG00000183662
GNOMAD BrowserENSG00000183662
Varsome BrowserTAFA1
Genetic variants : HAPMAP407738
Genomic Variants (DGV)TAFA1 [DGVbeta]
DECIPHERTAFA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAFA1 
Mutations
ICGC Data PortalTAFA1 
TCGA Data PortalTAFA1 
Broad Tumor PortalTAFA1
OASIS PortalTAFA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTAFA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAFA1
DgiDB (Drug Gene Interaction Database)TAFA1
DoCM (Curated mutations)TAFA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAFA1 (select a term)
intoGenTAFA1
Cancer3DTAFA1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617495   
Orphanet
DisGeNETTAFA1
MedgenTAFA1
Genetic Testing Registry TAFA1
NextProtQ7Z5A9 [Medical]
TSGene407738
GENETestsTAFA1
Target ValidationTAFA1
Huge Navigator TAFA1 [HugePedia]
snp3D : Map Gene to Disease407738
BioCentury BCIQTAFA1
ClinGenTAFA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD407738
Chemical/Pharm GKB GenePA134907870
Clinical trialTAFA1
Miscellaneous
canSAR (ICR)TAFA1 (select the gene name)
DataMed IndexTAFA1
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAFA1
EVEXTAFA1
GoPubMedTAFA1
iHOPTAFA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jan 27 15:09:10 CET 2020

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